Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H4K32_RS15940 Genome accession   NZ_CP059855
Coordinates   3067004..3068734 (+) Length   576 a.a.
NCBI ID   WP_003153174.1    Uniprot ID   -
Organism   Bacillus velezensis strain Pm9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3062004..3073734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS15915 - 3062405..3062659 (+) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -
  H4K32_RS15920 - 3062649..3063539 (+) 891 WP_043867281.1 polyprenyl synthetase family protein -
  H4K32_RS15925 dxs 3063683..3065584 (+) 1902 WP_044053456.1 1-deoxy-D-xylulose-5-phosphate synthase -
  H4K32_RS15930 - 3065581..3066426 (+) 846 WP_015388017.1 TlyA family RNA methyltransferase -
  H4K32_RS15935 ahrC 3066523..3066972 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  H4K32_RS15940 recN 3067004..3068734 (+) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  H4K32_RS15945 spoIVB 3068898..3070178 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  H4K32_RS15950 spo0A 3070459..3071259 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  H4K32_RS15955 alr 3071408..3072589 (-) 1182 WP_025852858.1 alanine racemase -
  H4K32_RS15960 - 3072764..3072976 (-) 213 WP_014305392.1 spore germination protein -
  H4K32_RS15965 - 3073105..3073317 (-) 213 WP_003153183.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64051.85 Da        Isoelectric Point: 4.7301

>NTDB_id=472323 H4K32_RS15940 WP_003153174.1 3067004..3068734(+) (recN) [Bacillus velezensis strain Pm9]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELQSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=472323 H4K32_RS15940 WP_003153174.1 3067004..3068734(+) (recN) [Bacillus velezensis strain Pm9]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGACGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAACACTTGGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCAACCTTTCAAATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCCTT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCATGGGCCA
AGAAACTGGCGGAAGCGATTCATCAGGAATTACAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCTGCCAGTGAAGCTCCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGCATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887