Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   H2784_RS13615 Genome accession   NZ_CP059547
Coordinates   2935045..2936082 (+) Length   345 a.a.
NCBI ID   WP_223069599.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10_3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2930045..2941082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2784_RS13605 (H2784_13605) - 2930428..2934024 (+) 3597 WP_223069597.1 AAA family ATPase -
  H2784_RS13610 (H2784_13610) - 2934226..2934918 (-) 693 WP_031962990.1 YggS family pyridoxal phosphate-dependent enzyme -
  H2784_RS13615 (H2784_13615) pilT 2935045..2936082 (+) 1038 WP_223069599.1 type IV pilus twitching motility protein PilT Machinery gene
  H2784_RS13620 (H2784_13620) pilU 2936110..2937228 (+) 1119 WP_000347036.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  H2784_RS13625 (H2784_13625) fur 2937298..2937735 (-) 438 WP_001122847.1 ferric iron uptake transcriptional regulator -
  H2784_RS13630 (H2784_13630) - 2937847..2938245 (+) 399 WP_001170994.1 outer membrane protein assembly factor BamE -
  H2784_RS13635 (H2784_13635) - 2938300..2938623 (-) 324 WP_000442585.1 RnfH family protein -
  H2784_RS13640 (H2784_13640) - 2938623..2939690 (-) 1068 WP_029776981.1 membrane protein -
  H2784_RS13645 (H2784_13645) - 2939843..2940298 (-) 456 WP_000782976.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38326.94 Da        Isoelectric Point: 6.7271

>NTDB_id=470410 H2784_RS13615 WP_223069599.1 2935045..2936082(+) (pilT) [Acinetobacter baumannii strain 10_3]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALEHKDVHRLIYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMLDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANHGMTTLDQSL
KGLVARGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=470410 H2784_RS13615 WP_223069599.1 2935045..2936082(+) (pilT) [Acinetobacter baumannii strain 10_3]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACATCTCTCTGCTGGCATGCCACCAAT
GATTCGTGTTGACGGTGAAGTTCGTCGTATTAACTTACCAGCCTTAGAACATAAAGATGTCCACCGTCTTATTTACGACA
TCATGAATGATAAACAGCGCCGTGACTATGAAGAAAAACTCGAAACTGACTTTTCTTTTGAAGTACCTAATGTTGCGCGT
TTCCGTGTTAACGCATTTAACCAAAACCGTGGTGCTGGTGCAGTATTTCGTACCATTCCATCTAAAGTCCTCACCATGGA
AGATCTAGGTCTAGGACAAATCTTTAAAGATATTTGCGACTATCCTCGTGGCATTGTACTGGTGACAGGACCAACAGGTT
CGGGTAAATCAACTACGCTTGCAGCGATGCTCGATTATATTAACGAAAACCGCTATGACCATATTTTAACGGTGGAAGAT
CCAATCGAATTTGTACATCAATCTAAGAAATGTCTCATTAACCAGCGTGAAGTGCATCGTGACACACACGGCTTTAATGA
AGCACTTCGCTCAGCACTGCGTGAAGACCCTGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAAACTATTCGCTTGG
CATTAACCGCTGCCGAAACAGGTCACTTGGTGTTTGGTACACTCCACACCACGTCGGCAGCAAAAACTATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGACATGGTTCGTGCCATGCTATCAGAATCTTTACAAGCGGTTATTTCACAAAC
CCTGCTTAAAAAGAATGGTGGTGGCCGTGTCGCAGCACATGAGATCATGATTGGTATTCCGGCTATTCGTAACTTAATTC
GTGAAAACAAAGTCGCGCAAATGTACTCAGCCATTCAAACTGGTGCCAATCATGGCATGACTACCCTCGACCAAAGTTTA
AAAGGCTTAGTCGCTCGCGGTGTGATTAGTCCACAAACCGCACGTACTGCGGCAAAACAGCCTGAATCATTCTTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii strain A118

99.71

100

0.997
  pilT Acinetobacter baumannii D1279779

99.71

100

0.997
  pilT Acinetobacter nosocomialis M2

99.42

100

0.994
  pilT Acinetobacter baylyi ADP1

89.244

99.71

0.89
  pilT Pseudomonas aeruginosa PAK

84.593

99.71

0.843
  pilT Pseudomonas stutzeri DSM 10701

84.302

99.71

0.841
  pilT Legionella pneumophila strain Lp02

75.872

99.71

0.757
  pilT Legionella pneumophila strain ERS1305867

75.872

99.71

0.757
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

72.024

97.391

0.701
  pilT Vibrio cholerae strain A1552

72.024

97.391

0.701
  pilT Neisseria meningitidis 8013

67.826

100

0.678
  pilT Neisseria gonorrhoeae MS11

67.536

100

0.675
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.522
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.299

97.101

0.391
  pilU Acinetobacter baylyi ADP1

39.017

100

0.391