Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   I6J92_RS12900 Genome accession   NZ_CP069517
Coordinates   2719084..2720064 (-) Length   326 a.a.
NCBI ID   WP_001467825.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1262     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2714084..2725064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J92_RS12870 (I6J92_12870) yggI 2714749..2715246 (+) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -
  I6J92_RS12875 (I6J92_12875) endA 2715341..2716048 (+) 708 WP_001305312.1 deoxyribonuclease I -
  I6J92_RS12880 (I6J92_12880) rsmE 2716128..2716859 (+) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I6J92_RS12885 (I6J92_12885) gshB 2716872..2717822 (+) 951 WP_000593256.1 glutathione synthase -
  I6J92_RS12890 (I6J92_12890) yqgE 2717931..2718494 (+) 564 WP_001053178.1 YqgE/AlgH family protein -
  I6J92_RS12895 (I6J92_12895) ruvX 2718494..2718910 (+) 417 WP_000017106.1 Holliday junction resolvase RuvX -
  I6J92_RS12900 (I6J92_12900) pilT 2719084..2720064 (-) 981 WP_001467825.1 type IV pilus twitching motility protein PilT Machinery gene
  I6J92_RS12905 (I6J92_12905) yggS 2720082..2720786 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  I6J92_RS12910 (I6J92_12910) yggT 2720804..2721370 (+) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  I6J92_RS12915 (I6J92_12915) yggU 2721367..2721657 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  I6J92_RS12920 (I6J92_12920) rdgB 2721665..2722258 (+) 594 WP_001174738.1 XTP/dITP diphosphatase -
  I6J92_RS12925 (I6J92_12925) hemW 2722251..2723387 (+) 1137 WP_000239951.1 radical SAM family heme chaperone HemW -
  I6J92_RS12930 (I6J92_12930) yggM 2723452..2724459 (-) 1008 WP_021580233.1 DUF1202 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36073.30 Da        Isoelectric Point: 5.9975

>NTDB_id=467690 I6J92_RS12900 WP_001467825.1 2719084..2720064(-) (pilT) [Escherichia coli strain FDAARGOS_1262]
MNMEEIVTLSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYTSQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VKEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=467690 I6J92_RS12900 WP_001467825.1 2719084..2720064(-) (pilT) [Escherichia coli strain FDAARGOS_1262]
ATGAATATGGAAGAAATTGTGACCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGAGAATGGAAGCTGCGCCGTTTGACGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGATTGCGCGGC
AGTGCGTTCGCACAACGGCAAGGTATTTCTCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CGCACCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATACCAGTCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACTTTCGCATCGGGATTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGATAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCGACATTACACACGCGCGGCGCAGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCTGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGTTGTCACAAAAACTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACACCCGCGGTGGGGAATTTGATTCGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGAAAGAAGGGCGCTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.476

100

0.488
  pilT Neisseria gonorrhoeae MS11

48.171

100

0.485
  pilT Acinetobacter baylyi ADP1

46.483

100

0.466
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

46.177

100

0.463
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain ERS1305867

44.954

100

0.451
  pilT Legionella pneumophila strain Lp02

44.954

100

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365
  pilB Legionella pneumophila strain ERS1305867

30.89

100

0.362