Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HWV00_RS19040 Genome accession   NZ_CP056123
Coordinates   4270737..4271771 (-) Length   344 a.a.
NCBI ID   WP_211683799.1    Uniprot ID   -
Organism   Moritella sp. 24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4265737..4276771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV00_RS19015 (HWV00_19015) - 4265857..4266537 (+) 681 WP_211683794.1 TIGR00153 family protein -
  HWV00_RS19020 (HWV00_19020) - 4266560..4267834 (+) 1275 WP_211683795.1 inorganic phosphate transporter -
  HWV00_RS19025 (HWV00_19025) - 4267994..4268641 (+) 648 WP_211683796.1 TIGR04211 family SH3 domain-containing protein -
  HWV00_RS19030 (HWV00_19030) yaaA 4268750..4269529 (-) 780 WP_211683797.1 peroxide stress protein YaaA -
  HWV00_RS19035 (HWV00_19035) pilU 4269610..4270725 (-) 1116 WP_211683798.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  HWV00_RS19040 (HWV00_19040) pilT 4270737..4271771 (-) 1035 WP_211683799.1 type IV pilus twitching motility protein PilT Machinery gene
  HWV00_RS19045 (HWV00_19045) - 4271802..4272497 (+) 696 WP_211683800.1 YggS family pyridoxal phosphate-dependent enzyme -
  HWV00_RS19050 (HWV00_19050) proC 4272556..4273383 (+) 828 WP_211683801.1 pyrroline-5-carboxylate reductase -
  HWV00_RS19055 (HWV00_19055) - 4273441..4273986 (+) 546 WP_211683802.1 YggT family protein -
  HWV00_RS19060 (HWV00_19060) - 4274100..4274528 (+) 429 WP_211683803.1 DUF4426 domain-containing protein -
  HWV00_RS19065 (HWV00_19065) - 4274631..4275245 (+) 615 WP_211683804.1 XTP/dITP diphosphatase -
  HWV00_RS19070 (HWV00_19070) hemW 4275296..4276432 (+) 1137 WP_211686711.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38572.10 Da        Isoelectric Point: 6.3905

>NTDB_id=458296 HWV00_RS19040 WP_211683799.1 4270737..4271771(-) (pilT) [Moritella sp. 24]
MDVTELLTFSVKHNASDLHLSSGVPPMIRVDGDVRKINLPAFDAKQVHALIYDIMDDKQRKDYEEHLEVDFSFEINNVAR
FRVNAFNQHRGPAATFRTIPSEVKTMAELNAPDIFHDFVELPRGLVLVTGPTGSGKSTTLAAMIDHINENQHKHILTIED
PIEFVHQNKKSLVNQREVFRDTKSFNAALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPGQEKDMVRSMLSESLRAVISQTLLKRTGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSVIQTGMMHGMQTLDQSL
RELVNMGIVTSEEARIRAVDQQNF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=458296 HWV00_RS19040 WP_211683799.1 4270737..4271771(-) (pilT) [Moritella sp. 24]
ATGGATGTTACAGAGTTACTTACATTTAGTGTAAAGCATAATGCATCAGATCTACACCTTTCTTCTGGTGTTCCTCCGAT
GATCCGTGTGGATGGTGACGTACGTAAAATAAACTTACCCGCTTTTGATGCTAAACAAGTACATGCGTTAATTTATGACA
TTATGGATGATAAACAACGCAAAGACTATGAAGAACATTTAGAAGTCGATTTTTCTTTTGAAATTAATAACGTTGCTCGT
TTTCGTGTGAATGCCTTTAATCAGCATCGTGGTCCGGCTGCAACATTCCGTACTATTCCAAGTGAAGTGAAAACAATGGC
GGAGTTAAACGCGCCTGATATTTTTCATGATTTTGTAGAATTACCACGTGGCTTAGTGTTGGTGACAGGGCCAACTGGTT
CAGGTAAGTCGACCACATTGGCAGCTATGATTGATCATATTAATGAGAATCAACATAAACACATTCTGACGATTGAAGAT
CCAATTGAATTTGTTCATCAGAATAAAAAAAGCTTGGTTAATCAGCGTGAAGTGTTCCGTGATACCAAGAGTTTTAATGC
CGCATTACGATCAGCGTTACGTGAAGATCCCGATATTATTTTAGTGGGTGAAATGCGAGATTTAGAAACGATCCGCTTGG
CATTAACAGCCGCAGAAACGGGGCATTTGGTGTTTGGTACGTTACATACCACGTCAGCTGCTAAAACGATTGACCGTATT
GTTGATGTATTTCCAGGACAAGAAAAGGACATGGTTCGCTCTATGTTGTCTGAATCATTACGTGCGGTAATTTCACAAAC
GTTATTAAAGCGTACTGGTGGCGGTCGTGTTGCTGCTCATGAGATCATGATAGGCACACCTGCTATTCGTAACTTGATCC
GTGAAGATAAAGTGGCGCAGATGTATTCAGTGATCCAAACGGGTATGATGCATGGTATGCAAACATTAGATCAATCACTA
CGTGAATTAGTGAACATGGGTATTGTGACGAGCGAAGAAGCGCGTATTAGAGCTGTAGATCAACAAAACTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

76.163

100

0.762
  pilT Acinetobacter baumannii D1279779

76.163

100

0.762
  pilT Acinetobacter baumannii strain A118

76.163

100

0.762
  pilT Pseudomonas stutzeri DSM 10701

76.163

100

0.762
  pilT Pseudomonas aeruginosa PAK

75.872

100

0.759
  pilT Acinetobacter baylyi ADP1

75.291

100

0.753
  pilT Legionella pneumophila strain Lp02

71.221

100

0.712
  pilT Legionella pneumophila strain ERS1305867

71.221

100

0.712
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.642

97.384

0.698
  pilT Vibrio cholerae strain A1552

71.642

97.384

0.698
  pilT Neisseria meningitidis 8013

68.696

100

0.689
  pilT Neisseria gonorrhoeae MS11

68.406

100

0.686
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.594

100

0.517
  pilU Pseudomonas stutzeri DSM 10701

39.233

98.547

0.387
  pilU Vibrio cholerae strain A1552

40.615

94.477

0.384
  pilU Acinetobacter baylyi ADP1

39.514

95.64

0.378