Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JJB06_RS09375 Genome accession   NZ_CP067342
Coordinates   1925663..1927090 (-) Length   475 a.a.
NCBI ID   WP_001471732.1    Uniprot ID   -
Organism   Escherichia coli strain ECJXMCRH7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920663..1932090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB06_RS09335 (JJB06_09290) hisG 1920785..1921101 (-) 317 Protein_1837 ATP phosphoribosyltransferase -
  JJB06_RS09340 (JJB06_09295) hisL 1921247..1921297 (-) 51 WP_001364200.1 his operon leader peptide -
  JJB06_RS09345 (JJB06_09300) yefM 1921580..1921831 (+) 252 WP_219360902.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  JJB06_RS09350 (JJB06_09305) yoeB 1921828..1922082 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  JJB06_RS09355 (JJB06_09310) yeeZ 1922165..1922989 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JJB06_RS09360 (JJB06_09315) yeeY 1923035..1923964 (+) 930 WP_000803374.1 LysR substrate-binding domain-containing protein -
  JJB06_RS09365 (JJB06_09320) yoeI 1924179..1924241 (+) 63 WP_010723108.1 membrane protein YoeI -
  JJB06_RS09370 (JJB06_09325) plaP 1924231..1925589 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JJB06_RS09375 (JJB06_09330) sbcB 1925663..1927090 (-) 1428 WP_001471732.1 exodeoxyribonuclease I Machinery gene
  JJB06_RS09380 (JJB06_09335) dacD 1927299..1928465 (+) 1167 WP_024201915.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JJB06_RS09385 (JJB06_09340) sbmC 1928584..1929057 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  JJB06_RS09390 (JJB06_09345) yeeA 1929255..1930313 (+) 1059 WP_001200890.1 FUSC family protein -
  JJB06_RS09395 (JJB06_09350) tmaR 1930485..1930814 (+) 330 WP_000450409.1 DUF496 family protein -
  JJB06_RS09400 (JJB06_09355) - 1930915..1931097 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  JJB06_RS09405 (JJB06_09360) - 1931151..1931297 (+) 147 Protein_1851 transposase domain-containing protein -
  JJB06_RS09410 (JJB06_09365) - 1931586..1931666 (-) 81 Protein_1852 hypothetical protein -
  JJB06_RS09415 (JJB06_09370) yeeW 1931712..1931906 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54497.81 Da        Isoelectric Point: 5.4700

>NTDB_id=457963 JJB06_RS09375 WP_001471732.1 1925663..1927090(-) (sbcB) [Escherichia coli strain ECJXMCRH7]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=457963 JJB06_RS09375 WP_001471732.1 1925663..1927090(-) (sbcB) [Escherichia coli strain ECJXMCRH7]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581