Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   HSZ49_RS00515 Genome accession   NZ_CP054438
Coordinates   115553..117181 (-) Length   542 a.a.
NCBI ID   WP_174543752.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110553..122181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS13280 (HSZ49_00490) - 111637..111840 (-) 204 WP_174543750.1 DNA methyltransferase -
  HSZ49_RS00495 (HSZ49_00495) - 111875..113707 (-) 1833 WP_174543751.1 hypothetical protein -
  HSZ49_RS00500 (HSZ49_00500) - 113808..114317 (-) 510 WP_107597475.1 DUF1643 domain-containing protein -
  HSZ49_RS00505 (HSZ49_00505) - 114333..114644 (-) 312 WP_107597476.1 DUF960 family protein -
  HSZ49_RS00510 (HSZ49_00510) - 114740..115078 (-) 339 WP_107597477.1 SAUGI family uracil-DNA glycosylase inhibitor -
  HSZ49_RS00515 (HSZ49_00515) ccrB 115553..117181 (-) 1629 WP_174543752.1 cassette chromosome recombinase CcrB Machinery gene
  HSZ49_RS00520 (HSZ49_00520) ccrA 117202..118551 (-) 1350 WP_174543753.1 cassette chromosome recombinase CcrA Machinery gene
  HSZ49_RS00525 (HSZ49_00525) - 118742..119020 (-) 279 WP_084944755.1 hypothetical protein -
  HSZ49_RS00530 (HSZ49_00530) cch1 119090..120889 (-) 1800 WP_174543754.1 cassette chromosome replicative helicase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62243.31 Da        Isoelectric Point: 9.8083

>NTDB_id=452482 HSZ49_RS00515 WP_174543752.1 115553..117181(-) (ccrB) [Staphylococcus saprophyticus strain UTI-042y]
MKEMKRKSVGCYVRVSTISQDIDKFSINGQITQIKEYCQFHGYEVFDIYADRGVSGKTMNRPELQRMLKDAKEGKLDCVM
IYKTSRLARNTSDLLTIVEGLHKQNVEFFSLSENMKFDSNSGKLLLQILASFSEFERNNIAEGAYMGQLRRSQEGYYQGN
LPLAYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSNKVLKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLASTLKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKHIALLLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTIFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=452482 HSZ49_RS00515 WP_174543752.1 115553..117181(-) (ccrB) [Staphylococcus saprophyticus strain UTI-042y]
ATGAAAGAAATGAAAAGAAAATCTGTAGGATGTTATGTTAGAGTTTCAACAATTTCTCAAGACATTGATAAATTTAGTAT
TAATGGTCAAATTACACAAATAAAGGAATATTGCCAATTTCACGGATATGAAGTTTTTGATATTTACGCTGACCGTGGTG
TTTCAGGAAAAACAATGAATCGCCCTGAGTTACAACGCATGTTAAAAGATGCTAAAGAAGGTAAATTGGATTGTGTTATG
ATTTATAAAACAAGTCGTTTAGCGCGTAACACATCTGACTTGTTAACGATTGTTGAAGGATTACACAAGCAAAATGTTGA
ATTCTTTAGCTTGTCCGAAAACATGAAATTCGACTCAAATAGCGGAAAATTACTCTTGCAGATTTTAGCTTCCTTCTCAG
AATTCGAAAGGAATAACATCGCAGAAGGAGCGTATATGGGACAATTGAGAAGATCCCAAGAAGGCTATTATCAGGGCAAT
TTACCGTTAGCTTATGATAAAATACCTGACAGTAAACATGAACTCATGATTAATCAACATGAAGCCAATATTGTGAAGTA
TATCTTTGAATCTTACGCTAAAGGTCATGGGTATCGTAAAATTGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGA
AGGGTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAACCAGTAATCGCCGAAGGCAAACACACCCCTATTAT
TAGCCAATCATTATGGGATAAAGTCCAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTCCATGGTAAAGGAACCA
ATATTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCACCTATGGCTGCGAGTAACACCACAAACACACTTAAAGAT
GGCACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATAGTCAAAAGTAATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAGCATCTACGCTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACATATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACAACTCAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACTCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACAATCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.074

100

0.801