Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   HSZ49_RS00520 Genome accession   NZ_CP054438
Coordinates   117202..118551 (-) Length   449 a.a.
NCBI ID   WP_174543753.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 112202..123551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS00500 (HSZ49_00500) - 113808..114317 (-) 510 WP_107597475.1 DUF1643 domain-containing protein -
  HSZ49_RS00505 (HSZ49_00505) - 114333..114644 (-) 312 WP_107597476.1 DUF960 family protein -
  HSZ49_RS00510 (HSZ49_00510) - 114740..115078 (-) 339 WP_107597477.1 SAUGI family uracil-DNA glycosylase inhibitor -
  HSZ49_RS00515 (HSZ49_00515) ccrB 115553..117181 (-) 1629 WP_174543752.1 cassette chromosome recombinase CcrB Machinery gene
  HSZ49_RS00520 (HSZ49_00520) ccrA 117202..118551 (-) 1350 WP_174543753.1 cassette chromosome recombinase CcrA Machinery gene
  HSZ49_RS00525 (HSZ49_00525) - 118742..119020 (-) 279 WP_084944755.1 hypothetical protein -
  HSZ49_RS00530 (HSZ49_00530) cch1 119090..120889 (-) 1800 WP_174543754.1 cassette chromosome replicative helicase -
  HSZ49_RS00535 (HSZ49_00535) - 121017..122444 (-) 1428 WP_174543755.1 DUF6038 family protein -
  HSZ49_RS00540 (HSZ49_00540) - 122873..123082 (+) 210 WP_047505035.1 PD-(D/E)XK nuclease family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52271.05 Da        Isoelectric Point: 10.1182

>NTDB_id=452483 HSZ49_RS00520 WP_174543753.1 117202..118551(-) (ccrA) [Staphylococcus saprophyticus strain UTI-042y]
MKQAIGYLRQSTTKQQSLAAQKQIIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVSNGIKEKARQGKLITTHAPFGYHYK
RGTFTINKNESPTVIAVFNYYLQGNGYKKITQFLEEDNKLIDRKPYQVRNIIMNPNYCGRVINHYGQYDNMFPSIVSTNM
YEQAQALRSQKQIKRTPSDNQLKQKIKCPYCGSTLTNMTIRKKNHTLRYYVCSRNMNASHFVCEFKGINAPKLETQVLTT
CQDFFQNQQLYLKINDVIQKRIKKQRALETKSTLTQQQLIDKLAKGSIDAETFRKQSQSLLQQSKPTLSINEQQIQRSFE
NVIQQRFTLNMLYPYIDEIHISKNKSLVGIYFKNEPLNIVNQATQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=452483 HSZ49_RS00520 WP_174543753.1 117202..118551(-) (ccrA) [Staphylococcus saprophyticus strain UTI-042y]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAATCATCAAGGC
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ACCAACAAATTACTGAACTGATTCAACAGGGACAATGTGACGTATTATGTTGCTATCGGCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGCCAAAAATATCATGTTCATATCTTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTTAAACTCAATATTTTCATCAGCTTGGCCGAATTAGAATCTGATAATATTGGCGAAC
AAGTAAGCAACGGGATAAAAGAAAAAGCGCGTCAGGGTAAATTGATAACTACACACGCCCCCTTTGGTTACCACTACAAA
CGTGGTACATTCACGATAAATAAGAATGAATCACCAACGGTAATTGCCGTATTCAATTACTATCTTCAAGGTAATGGCTA
TAAAAAAATTACACAGTTCTTAGAAGAAGATAACAAACTAATAGACCGTAAACCTTATCAAGTACGTAATATTATTATGA
ATCCCAATTACTGTGGTCGTGTTATCAATCACTACGGACAATATGACAATATGTTCCCGTCTATTGTTTCTACAAATATG
TACGAACAAGCGCAAGCTCTACGGTCACAAAAACAAATCAAACGAACACCTTCAGACAATCAACTCAAACAAAAAATCAA
ATGCCCTTATTGCGGATCGACGCTTACCAATATGACAATTAGAAAAAAGAACCATACATTACGTTACTATGTCTGTTCTC
GAAATATGAATGCATCTCATTTTGTCTGTGAATTCAAAGGGATTAATGCGCCAAAACTAGAAACTCAAGTCTTAACTACA
TGTCAGGACTTCTTTCAAAATCAACAACTTTACTTAAAAATCAACGATGTAATTCAAAAAAGGATCAAAAAACAAAGGGC
CCTAGAAACTAAGAGCACACTTACACAACAACAATTGATAGATAAATTAGCTAAAGGATCCATCGATGCAGAAACGTTCA
GAAAACAATCTCAATCGTTACTTCAACAATCAAAACCAACACTATCAATAAATGAGCAACAAATTCAAAGATCATTTGAA
AATGTAATTCAACAACGCTTCACGTTAAACATGTTATACCCATATATTGATGAAATTCATATTTCTAAAAACAAAAGCCT
TGTGGGAATCTATTTCAAAAATGAACCGCTAAACATTGTAAACCAAGCTACGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

81.737

100

0.817
  ccrA Staphylococcus aureus N315

76.615

100

0.766