NTDB

Overview

Name	comP	Type	Machinery gene
Locus tag	G4D73_RS11170	Genome accession	NZ_CP053947
Coordinates	2404429..2404851 (+)	Length	140 a.a.
NCBI ID	WP_213686782.1	Uniprot ID	-
Organism	Acinetobacter sp. WY4
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2399429..2409851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G4D73_RS11150	-	2400395..2401816 (+)	1422	WP_180086809.1	FAD-dependent oxidoreductase	-
G4D73_RS11155	-	2402000..2402590 (+)	591	WP_213686779.1	LemA family protein	-
G4D73_RS11160	-	2402621..2403664 (+)	1044	WP_213686780.1	TPM domain-containing protein	-
G4D73_RS11165	-	2403658..2404218 (+)	561	WP_213686781.1	TPM domain-containing protein	-
G4D73_RS11170	comP	2404429..2404851 (+)	423	WP_213686782.1	pilin	Machinery gene
G4D73_RS11175	-	2404864..2406372 (+)	1509	WP_213686783.1	O-antigen ligase family protein	-
G4D73_RS11180	-	2406504..2408138 (+)	1635	WP_213686784.1	PglL family O-oligosaccharyltransferase	-
G4D73_RS11185	bfr	2408193..2408657 (-)	465	WP_213686785.1	heteropolymeric bacterioferritin subunit Bfr	-

Sequence

Protein

Download Length: 140 a.a. Molecular weight: 14288.35 Da Isoelectric Point: 8.1071

                                >NTDB_id=449314 G4D73_RS11170 WP_213686782.1 2404429..2404851(+) (comP) [Acinetobacter sp. WY4]

MNAQKGFTLIELMIVVAIIGILAAIAIPAYTDYTVRARVSEGLSTAAAMKATVSENIANAGGAIASSGNCTGVTGISTSN

STTNVKTAECNDANGKITVTMNPNAKDAVLVLTPTINGGAVKWACTTTTDKKYVPSECRS

Nucleotide

Download Length: 423 bp

                                >NTDB_id=449314 G4D73_RS11170 WP_213686782.1 2404429..2404851(+) (comP) [Acinetobacter sp. WY4]

ATGAACGCTCAAAAAGGTTTTACATTGATCGAGCTGATGATTGTTGTCGCTATTATCGGTATTTTAGCTGCGATTGCGAT

TCCTGCATATACTGATTACACTGTACGTGCGCGAGTTTCTGAAGGTCTCAGTACAGCAGCTGCAATGAAGGCAACTGTTT

CCGAAAATATTGCTAATGCAGGTGGAGCTATAGCAAGTTCCGGTAATTGTACTGGTGTAACAGGTATCAGTACTTCTAAT

TCAACAACTAATGTAAAAACAGCTGAATGTAATGATGCTAATGGTAAAATTACTGTTACAATGAATCCTAATGCAAAAGA

TGCTGTACTTGTTTTAACTCCTACGATCAATGGTGGAGCAGTTAAATGGGCTTGTACAACAACTACTGATAAAAAATATG

TTCCATCAGAGTGTCGTTCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-139)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comP	Acinetobacter baylyi ADP1	67.808	100	0.707
pilA	Ralstonia pseudosolanacearum GMI1000	45.679	100	0.529
pilA2	Legionella pneumophila str. Paris	50.725	98.571	0.5
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	38.043	100	0.5
pilA2	Legionella pneumophila strain ERS1305867	50	98.571	0.493
pilE	Neisseria gonorrhoeae MS11	39.623	100	0.45
pilA	Pseudomonas aeruginosa PAK	37.58	100	0.421
pilE	Neisseria gonorrhoeae strain FA1090	37.107	100	0.421
pilA	Acinetobacter baumannii strain A118	41.844	100	0.421
pilA/pilAI	Pseudomonas stutzeri DSM 10701	42.446	99.286	0.421
pilA	Haemophilus influenzae 86-028NP	39.706	97.143	0.386
pilA	Haemophilus influenzae Rd KW20	39.259	96.429	0.379
pilA/pilAII	Pseudomonas stutzeri DSM 10701	37.681	98.571	0.371
pilA	Glaesserella parasuis strain SC1401	41.129	88.571	0.364
pilA	Vibrio cholerae C6706	36.17	100	0.364
pilA	Vibrio cholerae strain A1552	36.17	100	0.364
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	36.17	100	0.364

Detailed information NTG0449314