Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HQN78_RS19685 Genome accession   NZ_CP053750
Coordinates   4238805..4239842 (+) Length   345 a.a.
NCBI ID   WP_043589321.1    Uniprot ID   -
Organism   Chromobacterium sp. Beijing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4233805..4244842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN78_RS19655 (HQN78_19450) aroG 4234011..4235072 (-) 1062 WP_235085726.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  HQN78_RS19660 (HQN78_19455) dksA 4235305..4235715 (-) 411 WP_019102526.1 RNA polymerase-binding protein DksA -
  HQN78_RS19665 (HQN78_19460) - 4236000..4236305 (-) 306 WP_107801226.1 c-type cytochrome -
  HQN78_RS19670 (HQN78_19465) - 4236398..4236979 (-) 582 WP_107801225.1 YggT family protein -
  HQN78_RS19675 (HQN78_19470) proC 4236988..4237791 (-) 804 WP_107801224.1 pyrroline-5-carboxylate reductase -
  HQN78_RS19680 (HQN78_19475) - 4237845..4238537 (-) 693 WP_227105727.1 YggS family pyridoxal phosphate-dependent enzyme -
  HQN78_RS19685 (HQN78_19480) pilT 4238805..4239842 (+) 1038 WP_043589321.1 type IV pilus twitching motility protein PilT Machinery gene
  HQN78_RS19690 (HQN78_19485) pilU 4239888..4241024 (+) 1137 WP_048412756.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  HQN78_RS19695 (HQN78_19490) - 4241166..4241753 (-) 588 WP_107801222.1 TetR/AcrR family transcriptional regulator -
  HQN78_RS19700 (HQN78_19495) - 4242089..4244005 (+) 1917 WP_235085729.1 diguanylate cyclase -
  HQN78_RS19705 (HQN78_19500) - 4244058..4244765 (+) 708 WP_107802064.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38336.12 Da        Isoelectric Point: 6.7774

>NTDB_id=446919 HQN78_RS19685 WP_043589321.1 4238805..4239842(+) (pilT) [Chromobacterium sp. Beijing]
MEISELLAFTVKNKASDLHLSAGLPPMIRVNGDIRRINLPPMDHHDVHDMVYDIMNDYQRKIFEDTFECDFSFDLPGIAR
FRVNSFVQNRGMGAVFRVIPSKVLSLEQLGAPKIFQEIAAFPRGLVLVTGPTGSGKSTTLAAMIDFINDNHFSHILTVED
PIEFVHDSKKCLINQRELGLQTHSFANALKSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
VDVFPAGEKEMVRSMLSESVRAVIAQTLLKTKDGSGRVAAHEIMLGTPAIRNLIRENKIAQINSMIQTGQQHGMQTLDQC
LQELVRRNMVSPADARQKAANKDQF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=446919 HQN78_RS19685 WP_043589321.1 4238805..4239842(+) (pilT) [Chromobacterium sp. Beijing]
ATGGAAATTTCGGAGCTCTTGGCCTTTACGGTCAAGAACAAGGCGTCCGACCTGCACCTGTCCGCCGGGCTGCCGCCGAT
GATCCGGGTGAACGGCGACATCCGCCGCATCAACCTGCCGCCGATGGACCACCATGACGTGCACGACATGGTGTACGACA
TCATGAACGATTACCAGCGCAAAATCTTCGAAGACACCTTCGAGTGCGACTTTTCCTTCGACCTGCCCGGCATCGCCCGC
TTCCGCGTCAACTCCTTCGTGCAGAACCGCGGCATGGGGGCGGTGTTCCGGGTGATTCCGTCCAAGGTGCTGTCGCTGGA
GCAGCTGGGCGCGCCCAAGATCTTCCAGGAAATCGCCGCCTTTCCGCGCGGGCTGGTGCTGGTGACCGGCCCCACCGGCT
CAGGCAAGTCCACCACGCTGGCGGCGATGATTGATTTCATCAACGACAACCACTTCTCCCATATCCTGACCGTGGAGGAT
CCGATCGAGTTCGTCCACGACAGCAAGAAGTGCCTGATCAACCAGCGCGAGCTGGGCTTGCAGACCCACAGCTTCGCCAA
TGCGCTGAAGTCCGCCCTGCGCGAAGACCCGGACGTGATCCTGGTGGGCGAATTGCGCGATCTGGAAACCATACGCCTGG
CGCTGACCGCGGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCAGCTCCGCCGCCAAGACCATAGACCGTATC
GTCGACGTGTTCCCGGCCGGGGAAAAGGAGATGGTGCGTTCGATGCTGTCCGAATCGGTGCGCGCGGTGATCGCCCAGAC
CCTGCTCAAGACCAAGGACGGCAGCGGGCGGGTGGCCGCGCATGAAATCATGCTGGGCACCCCGGCGATCCGCAACCTGA
TCCGCGAGAACAAGATCGCCCAGATCAACTCCATGATCCAGACCGGTCAGCAGCACGGCATGCAGACGCTGGACCAGTGT
CTACAGGAGCTGGTGCGGCGCAATATGGTGTCGCCGGCGGACGCCAGACAAAAGGCCGCCAACAAGGATCAATTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

72.174

100

0.722
  pilT Acinetobacter baumannii strain A118

72.174

100

0.722
  pilT Acinetobacter baumannii D1279779

72.174

100

0.722
  pilT Neisseria meningitidis 8013

71.429

99.42

0.71
  pilT Neisseria gonorrhoeae MS11

71.429

99.42

0.71
  pilT Pseudomonas stutzeri DSM 10701

71.014

100

0.71
  pilT Legionella pneumophila strain Lp02

70.725

100

0.707
  pilT Pseudomonas aeruginosa PAK

70.725

100

0.707
  pilT Legionella pneumophila strain ERS1305867

70.725

100

0.707
  pilT Acinetobacter baylyi ADP1

70.435

100

0.704
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

66.568

97.971

0.652
  pilT Vibrio cholerae strain A1552

66.568

97.971

0.652
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.304

100

0.513
  pilU Vibrio cholerae strain A1552

41.888

98.261

0.412
  pilU Pseudomonas stutzeri DSM 10701

42.09

97.101

0.409
  pilU Acinetobacter baylyi ADP1

41.176

98.551

0.406