Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | FRAAU_RS12460 | Genome accession | NC_017033 |
| Coordinates | 2687690..2688727 (-) | Length | 345 a.a. |
| NCBI ID | WP_014403879.1 | Uniprot ID | - |
| Organism | Frateuria aurantia DSM 6220 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2682690..2693727
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRAAU_RS12450 (Fraau_2515) | - | 2684118..2686271 (+) | 2154 | WP_014403877.1 | M13-type metalloendopeptidase | - |
| FRAAU_RS12455 (Fraau_2516) | pilU | 2686495..2687655 (-) | 1161 | WP_014403878.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| FRAAU_RS12460 (Fraau_2517) | pilT | 2687690..2688727 (-) | 1038 | WP_014403879.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| FRAAU_RS12465 (Fraau_2518) | proC | 2688898..2689725 (+) | 828 | WP_014403880.1 | pyrroline-5-carboxylate reductase | - |
| FRAAU_RS12470 (Fraau_2519) | - | 2689722..2690294 (+) | 573 | WP_014403881.1 | YggT family protein | - |
| FRAAU_RS12475 (Fraau_2520) | rlmB | 2690509..2691255 (-) | 747 | WP_014403882.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| FRAAU_RS12480 (Fraau_2521) | rnr | 2691248..2693650 (-) | 2403 | WP_245546483.1 | ribonuclease R | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38296.82 Da Isoelectric Point: 6.5038
>NTDB_id=44324 FRAAU_RS12460 WP_014403879.1 2687690..2688727(-) (pilT) [Frateuria aurantia DSM 6220]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDIRRLNLPALDHTEVHGLIYDIMSDQQRRDYEQDLETDFSFELADLAR
FRVNAFNQSRGAAAVFRTIPSQVLSLDDLGAPAIFKSLIDQPQGLVLVTGPTGSGKSTTLAAMIDHLNRTRYGHILTVED
PVEFVHTPQRCLINQREVHRDTKGFNEALRSALREDPDFILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKSMVRSMLSESLRAVVGQTLLKKVNGGRVAAHEIMVAVPAIRNLIREDKVAQMYSAIQTGQQFGMQTLDQCL
QQLVQQGVVTRMEAANYSRTREPMR
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDIRRLNLPALDHTEVHGLIYDIMSDQQRRDYEQDLETDFSFELADLAR
FRVNAFNQSRGAAAVFRTIPSQVLSLDDLGAPAIFKSLIDQPQGLVLVTGPTGSGKSTTLAAMIDHLNRTRYGHILTVED
PVEFVHTPQRCLINQREVHRDTKGFNEALRSALREDPDFILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKSMVRSMLSESLRAVVGQTLLKKVNGGRVAAHEIMVAVPAIRNLIREDKVAQMYSAIQTGQQFGMQTLDQCL
QQLVQQGVVTRMEAANYSRTREPMR
Nucleotide
Download Length: 1038 bp
>NTDB_id=44324 FRAAU_RS12460 WP_014403879.1 2687690..2688727(-) (pilT) [Frateuria aurantia DSM 6220]
ATGGATATCGCCGAGCTGTTGGCCTTTTCTGTCAAGAACAAGGCTTCGGACCTTCATTTGTCGGCCGGGCTGCCCCCGAT
GATTCGCGTGGATGGCGATATTCGTCGCCTGAATCTGCCGGCGCTGGATCATACCGAGGTGCATGGCCTGATCTACGACA
TCATGTCCGATCAGCAGCGGCGTGATTACGAGCAGGATCTCGAAACCGACTTTTCATTCGAGCTGGCGGATCTGGCCCGT
TTCCGTGTCAACGCCTTCAACCAGAGTCGCGGTGCGGCAGCGGTGTTCCGGACCATCCCCAGTCAGGTACTGTCACTGGA
CGACCTGGGCGCGCCGGCCATCTTCAAGTCCCTGATCGATCAGCCGCAGGGGCTTGTGCTGGTGACCGGGCCCACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGATCGATCATCTCAATCGCACCCGTTACGGACATATTCTCACTGTCGAGGAT
CCGGTCGAATTCGTGCATACGCCGCAGCGTTGCCTGATCAACCAGCGCGAGGTGCATCGCGACACGAAGGGCTTCAACGA
GGCCCTGCGCTCGGCGCTGCGCGAGGATCCCGACTTTATCCTGGTCGGTGAATTGCGGGATCTCGAGACGATCCGGCTGG
CCTTGACCGCCGCCGAAACCGGCCATCTGGTGTTCGGTACCTTGCATACCAGTTCGGCGGCCAAGACGATCGATCGCATC
ATCGATGTGTTTCCGGCGGGCGAGAAATCCATGGTCCGCTCGATGCTTTCCGAATCCTTGCGGGCCGTGGTCGGCCAGAC
CCTGCTGAAAAAGGTCAATGGCGGTCGGGTGGCGGCACACGAGATCATGGTCGCGGTGCCGGCCATCCGCAATTTGATCC
GTGAAGACAAGGTGGCCCAGATGTATTCGGCCATCCAGACCGGGCAGCAATTCGGCATGCAGACCCTGGACCAGTGCCTG
CAGCAACTGGTGCAGCAAGGGGTGGTGACCCGCATGGAAGCGGCCAATTATTCCCGTACCCGCGAGCCGATGCGCTGA
ATGGATATCGCCGAGCTGTTGGCCTTTTCTGTCAAGAACAAGGCTTCGGACCTTCATTTGTCGGCCGGGCTGCCCCCGAT
GATTCGCGTGGATGGCGATATTCGTCGCCTGAATCTGCCGGCGCTGGATCATACCGAGGTGCATGGCCTGATCTACGACA
TCATGTCCGATCAGCAGCGGCGTGATTACGAGCAGGATCTCGAAACCGACTTTTCATTCGAGCTGGCGGATCTGGCCCGT
TTCCGTGTCAACGCCTTCAACCAGAGTCGCGGTGCGGCAGCGGTGTTCCGGACCATCCCCAGTCAGGTACTGTCACTGGA
CGACCTGGGCGCGCCGGCCATCTTCAAGTCCCTGATCGATCAGCCGCAGGGGCTTGTGCTGGTGACCGGGCCCACCGGTT
CGGGCAAGTCGACCACGCTGGCGGCGATGATCGATCATCTCAATCGCACCCGTTACGGACATATTCTCACTGTCGAGGAT
CCGGTCGAATTCGTGCATACGCCGCAGCGTTGCCTGATCAACCAGCGCGAGGTGCATCGCGACACGAAGGGCTTCAACGA
GGCCCTGCGCTCGGCGCTGCGCGAGGATCCCGACTTTATCCTGGTCGGTGAATTGCGGGATCTCGAGACGATCCGGCTGG
CCTTGACCGCCGCCGAAACCGGCCATCTGGTGTTCGGTACCTTGCATACCAGTTCGGCGGCCAAGACGATCGATCGCATC
ATCGATGTGTTTCCGGCGGGCGAGAAATCCATGGTCCGCTCGATGCTTTCCGAATCCTTGCGGGCCGTGGTCGGCCAGAC
CCTGCTGAAAAAGGTCAATGGCGGTCGGGTGGCGGCACACGAGATCATGGTCGCGGTGCCGGCCATCCGCAATTTGATCC
GTGAAGACAAGGTGGCCCAGATGTATTCGGCCATCCAGACCGGGCAGCAATTCGGCATGCAGACCCTGGACCAGTGCCTG
CAGCAACTGGTGCAGCAAGGGGTGGTGACCCGCATGGAAGCGGCCAATTATTCCCGTACCCGCGAGCCGATGCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baylyi ADP1 |
76.316 |
99.13 |
0.757 |
| pilT | Acinetobacter nosocomialis M2 |
75.731 |
99.13 |
0.751 |
| pilT | Acinetobacter baumannii D1279779 |
75.731 |
99.13 |
0.751 |
| pilT | Acinetobacter baumannii strain A118 |
75.731 |
99.13 |
0.751 |
| pilT | Pseudomonas stutzeri DSM 10701 |
74.854 |
99.13 |
0.742 |
| pilT | Pseudomonas aeruginosa PAK |
74.269 |
99.13 |
0.736 |
| pilT | Legionella pneumophila strain Lp02 |
75.15 |
96.812 |
0.728 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.15 |
96.812 |
0.728 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
70.27 |
96.522 |
0.678 |
| pilT | Vibrio cholerae strain A1552 |
70.27 |
96.522 |
0.678 |
| pilT | Neisseria meningitidis 8013 |
65.507 |
100 |
0.655 |
| pilT | Neisseria gonorrhoeae MS11 |
65.217 |
100 |
0.652 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.453 |
95.942 |
0.484 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.714 |
100 |
0.403 |
| pilU | Vibrio cholerae strain A1552 |
39.306 |
100 |
0.394 |
| pilU | Acinetobacter baylyi ADP1 |
38.04 |
100 |
0.383 |