NTDB

Overview

Name	pilT	Type	Machinery gene
Locus tag	HH213_RS15940	Genome accession	NZ_CP051684
Coordinates	3496904..3497947 (-)	Length	347 a.a.
NCBI ID	WP_169112861.1	Uniprot ID	-
Organism	Duganella dendranthematis strain AF9R3
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3491904..3502947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HH213_RS15925 (HH213_15925)	-	3492605..3495103 (-)	2499	WP_229263023.1	bifunctional diguanylate cyclase/phosphodiesterase	-
HH213_RS15930 (HH213_15930)	-	3495270..3495755 (-)	486	WP_169112859.1	glutathione peroxidase	-
HH213_RS15935 (HH213_15935)	pilU	3495755..3496891 (-)	1137	WP_169112860.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
HH213_RS15940 (HH213_15940)	pilT	3496904..3497947 (-)	1044	WP_169112861.1	type IV pilus twitching motility protein PilT	Machinery gene
HH213_RS15945 (HH213_15945)	-	3498008..3498721 (+)	714	WP_169115217.1	YggS family pyridoxal phosphate-dependent enzyme	-
HH213_RS15950 (HH213_15950)	proC	3498725..3499546 (+)	822	WP_169112862.1	pyrroline-5-carboxylate reductase	-
HH213_RS15955 (HH213_15955)	-	3499652..3499987 (-)	336	WP_110847340.1	YqjD family protein	-
HH213_RS15960 (HH213_15960)	ubiA	3500083..3500937 (-)	855	WP_169112863.1	4-hydroxybenzoate octaprenyltransferase	-
HH213_RS15965 (HH213_15965)	-	3500993..3501928 (-)	936	WP_161057424.1	hydrogen peroxide-inducible genes activator	-

Sequence

Protein

Download Length: 347 a.a. Molecular weight: 37967.58 Da Isoelectric Point: 6.7265

                                >NTDB_id=440439 HH213_RS15940 WP_169112861.1 3496904..3497947(-) (pilT) [Duganella dendranthematis strain AF9R3]

MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDSQRKAYEEMLEVDFSFAIPGLAR

FRVNAYNQERGASAVLRTIPSKILSLEDLNAPKIFAEFALKPRGLVLVTGPTGSGKSTTLAAMVNHLNENEYGHILTIED

PIEFVHESKKCLINQREVGPHTLSFNNALRSALREDPDCILVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI

VDVFPADEKEMVRAMLSESLQAVISQTLLKTKDGTGRVAAHEIMVATPAIRNLIREAKVAQMYSAIQTGSSVGMQTLDQN

LTDLVRRNIISGAAARSAAKSPDNFPG

Nucleotide

Download Length: 1044 bp

                                >NTDB_id=440439 HH213_RS15940 WP_169112861.1 3496904..3497947(-) (pilT) [Duganella dendranthematis strain AF9R3]

ATGGACATCTCCGAACTACTCGCATTCTCCGTCAAGAACAAGGCTTCGGACTTGCACCTGTCCGCCGGGCTGCCGCCGAT

GATACGCGTGCACGGCGACGTGCGCCGCATCAACCTGCCGCCGCTGGAGCACAAGGACGTGCACGGCATGATCTATGACA

TCATGAACGACTCGCAGCGCAAGGCCTACGAGGAAATGCTGGAGGTCGACTTCTCGTTCGCGATTCCCGGCCTGGCGCGT

TTCCGCGTCAACGCCTACAACCAGGAGCGCGGGGCGTCGGCGGTATTGCGCACCATTCCGTCCAAGATCCTCAGCCTGGA

AGACTTGAACGCGCCGAAGATCTTCGCCGAGTTCGCGCTGAAACCGCGCGGGCTGGTGCTGGTGACCGGGCCGACCGGCT

CGGGCAAGTCGACCACGCTGGCGGCCATGGTCAACCACCTCAACGAAAACGAATACGGCCACATTCTGACCATCGAAGAC

CCGATCGAGTTCGTGCACGAATCCAAGAAATGCCTGATCAACCAGCGCGAAGTGGGACCGCACACGCTGTCGTTCAACAA

CGCGCTGCGCTCGGCGTTGCGGGAAGACCCGGACTGCATCCTGGTCGGCGAGCTGCGCGACCTGGAAACCATCCGCCTGG

CCTTGTCGGCGGCGGAGACCGGCCACCTGGTGTTCGGCACGCTGCACACCTCGTCGGCGGCCAAGACCATCGACCGTATT

GTCGACGTGTTCCCGGCCGATGAAAAGGAAATGGTGCGCGCCATGCTGTCGGAATCGCTGCAGGCCGTGATTTCGCAGAC

CCTGCTGAAAACCAAGGACGGCACCGGCCGCGTGGCGGCGCACGAAATCATGGTGGCGACGCCGGCCATCCGCAACCTGA

TCCGCGAAGCCAAAGTGGCGCAAATGTACTCGGCGATCCAGACCGGCAGCAGCGTCGGCATGCAGACGCTGGACCAGAAC

CTGACCGATCTGGTCCGCCGCAACATCATCAGTGGCGCCGCCGCCCGCAGCGCCGCCAAGTCGCCCGACAACTTCCCCGG

TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilT	Acinetobacter nosocomialis M2	76.232	99.424	0.758
pilT	Acinetobacter baumannii D1279779	76.232	99.424	0.758
pilT	Acinetobacter baumannii strain A118	76.232	99.424	0.758
pilT	Pseudomonas aeruginosa PAK	76.232	99.424	0.758
pilT	Pseudomonas stutzeri DSM 10701	75.072	99.424	0.746
pilT	Acinetobacter baylyi ADP1	74.203	99.424	0.738
pilT	Legionella pneumophila strain Lp02	75.221	97.695	0.735
pilT	Legionella pneumophila strain ERS1305867	75.221	97.695	0.735
pilT	Neisseria gonorrhoeae MS11	68.696	99.424	0.683
pilT	Neisseria meningitidis 8013	68.696	99.424	0.683
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	69.139	97.118	0.671
pilT	Vibrio cholerae strain A1552	69.139	97.118	0.671
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	51.014	99.424	0.507
pilU	Acinetobacter baylyi ADP1	42.197	99.712	0.421
pilU	Pseudomonas stutzeri DSM 10701	42.593	93.372	0.398
pilU	Vibrio cholerae strain A1552	40	99.424	0.398

Detailed information NTG0440439