Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HER17_RS03545 Genome accession   NZ_CP051652
Coordinates   806281..806826 (-) Length   181 a.a.
NCBI ID   WP_010295128.1    Uniprot ID   A0AAP8X217
Organism   Pectobacterium carotovorum strain WPP14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 801281..811826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HER17_RS03520 (HER17_03530) - 801642..802640 (+) 999 WP_010295143.1 carbohydrate ABC transporter permease -
  HER17_RS03525 (HER17_03535) - 802649..803701 (+) 1053 WP_010295141.1 carbohydrate ABC transporter permease -
  HER17_RS03530 (HER17_03540) - 803701..804738 (+) 1038 WP_010295136.1 LacI family DNA-binding transcriptional regulator -
  HER17_RS03535 (HER17_03545) - 804805..805260 (-) 456 WP_010295133.1 N-acetyltransferase -
  HER17_RS03540 (HER17_03550) - 805511..806122 (+) 612 WP_010295131.1 hypothetical protein -
  HER17_RS03545 (HER17_03555) ssb 806281..806826 (-) 546 WP_010295128.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HER17_RS03550 (HER17_03560) uvrA 807077..809911 (+) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  HER17_RS03555 (HER17_03565) - 809927..810346 (+) 420 WP_010295119.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HER17_RS03560 (HER17_03570) cas6f 810963..811517 (-) 555 WP_010295117.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19172.13 Da        Isoelectric Point: 5.2456

>NTDB_id=440264 HER17_RS03545 WP_010295128.1 806281..806826(-) (ssb) [Pectobacterium carotovorum strain WPP14]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=440264 HER17_RS03545 WP_010295128.1 806281..806826(-) (ssb) [Pectobacterium carotovorum strain WPP14]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGGAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTGGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGTGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGTCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAGCAGCGCCCTGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459