Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   HG421_RS13580 Genome accession   NZ_CP051651
Coordinates   3216804..3217229 (-) Length   141 a.a.
NCBI ID   WP_169706821.1    Uniprot ID   A0A7Z2VBY0
Organism   Xanthomonas campestris pv. badrii strain NEB122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3211804..3222229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG421_RS13550 (HG421_13550) pilR 3212393..3213787 (+) 1395 WP_169706816.1 sigma-54 dependent transcriptional regulator Regulator
  HG421_RS13555 (HG421_13555) - 3213947..3214135 (-) 189 WP_169706817.1 hypothetical protein -
  HG421_RS13560 (HG421_13560) pilB 3214137..3214256 (-) 120 WP_029220459.1 hypothetical protein Machinery gene
  HG421_RS13565 (HG421_13565) - 3214325..3214513 (-) 189 WP_169706818.1 hypothetical protein -
  HG421_RS13570 (HG421_13570) pilB 3214515..3216248 (-) 1734 WP_169706819.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HG421_RS21435 (HG421_13575) pilA2 3216291..3216704 (-) 414 WP_169706820.1 pilin Machinery gene
  HG421_RS13580 (HG421_13580) comP 3216804..3217229 (-) 426 WP_169706821.1 pilin Machinery gene
  HG421_RS13585 (HG421_13585) pilC 3217588..3218847 (+) 1260 WP_169706822.1 type II secretion system F family protein Machinery gene
  HG421_RS13590 (HG421_13590) - 3218854..3219717 (+) 864 WP_169706823.1 A24 family peptidase -
  HG421_RS13595 (HG421_13595) coaE 3219731..3220339 (+) 609 WP_169706824.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14417.56 Da        Isoelectric Point: 8.4798

>NTDB_id=440251 HG421_RS13580 WP_169706821.1 3216804..3217229(-) (comP) [Xanthomonas campestris pv. badrii strain NEB122]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELSVMASSFKTTVAENIANNGGALPADACTGVGATAATTN
MASISCTAATGAIIVTGDATRTKGTILTYTPTVGAANSAVGTTWRCVGSGSQSKYYPAECR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=440251 HG421_RS13580 WP_169706821.1 3216804..3217229(-) (comP) [Xanthomonas campestris pv. badrii strain NEB122]
ATGAAGAAGCAGCAAGGCTTTACCTTGATAGAACTGATGATCGTCGTGGCGATCATTGCAATTCTGGCCGCCATCGCGCT
GCCGGCCTACCAGGACTACACCATCCGTTCGCGTGTTTCAGAACTGTCCGTGATGGCTAGCTCGTTCAAGACCACCGTAG
CGGAAAACATCGCCAATAATGGCGGTGCTTTGCCGGCCGACGCGTGCACCGGCGTTGGTGCCACTGCCGCGACGACCAAC
ATGGCTTCGATCAGCTGTACTGCTGCTACTGGTGCAATCATCGTGACCGGCGACGCTACCCGCACCAAGGGCACGATCCT
CACCTACACCCCGACCGTGGGCGCCGCCAACTCCGCAGTGGGCACCACTTGGCGCTGCGTCGGCAGCGGCAGCCAGTCCA
AGTATTACCCGGCTGAGTGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2VBY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.967

100

0.589
  pilA2 Legionella pneumophila str. Paris

56.028

100

0.56
  pilA2 Legionella pneumophila strain ERS1305867

55.319

100

0.553
  pilA Ralstonia pseudosolanacearum GMI1000

40.361

100

0.475
  pilA Acinetobacter baumannii strain A118

43.056

100

0.44
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.559

100

0.411
  pilA/pilA1 Eikenella corrodens VA1

37.908

100

0.411
  pilA Pseudomonas aeruginosa PAK

36.774

100

0.404
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.671

100

0.39
  pilA Haemophilus influenzae 86-028NP

38.194

100

0.39
  pilA Glaesserella parasuis strain SC1401

37.324

100

0.376
  pilA Vibrio parahaemolyticus RIMD 2210633

40.31

91.489

0.369
  pilA Haemophilus influenzae Rd KW20

36.111

100

0.369