Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   HG421_RS13560 Genome accession   NZ_CP051651
Coordinates   3214137..3214256 (-) Length   39 a.a.
NCBI ID   WP_029220459.1    Uniprot ID   A0A7Z2ZHL3
Organism   Xanthomonas campestris pv. badrii strain NEB122     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3209137..3219256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG421_RS13545 (HG421_13545) - 3210464..3212077 (+) 1614 WP_169706815.1 HAMP domain-containing sensor histidine kinase -
  HG421_RS13550 (HG421_13550) pilR 3212393..3213787 (+) 1395 WP_169706816.1 sigma-54 dependent transcriptional regulator Regulator
  HG421_RS13555 (HG421_13555) - 3213947..3214135 (-) 189 WP_169706817.1 hypothetical protein -
  HG421_RS13560 (HG421_13560) pilB 3214137..3214256 (-) 120 WP_029220459.1 hypothetical protein Machinery gene
  HG421_RS13565 (HG421_13565) - 3214325..3214513 (-) 189 WP_169706818.1 hypothetical protein -
  HG421_RS13570 (HG421_13570) pilB 3214515..3216248 (-) 1734 WP_169706819.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HG421_RS21435 (HG421_13575) pilA2 3216291..3216704 (-) 414 WP_169706820.1 pilin Machinery gene
  HG421_RS13580 (HG421_13580) comP 3216804..3217229 (-) 426 WP_169706821.1 pilin Machinery gene
  HG421_RS13585 (HG421_13585) pilC 3217588..3218847 (+) 1260 WP_169706822.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4235.93 Da        Isoelectric Point: 10.4810

>NTDB_id=440249 HG421_RS13560 WP_029220459.1 3214137..3214256(-) (pilB) [Xanthomonas campestris pv. badrii strain NEB122]
MQIAEAAQKIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=440249 HG421_RS13560 WP_029220459.1 3214137..3214256(-) (pilB) [Xanthomonas campestris pv. badrii strain NEB122]
ATGCAGATCGCCGAGGCGGCGCAGAAGATCGGCATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCATGGGGT
GACTAGCCTGGCCGAGATCAATCGGGTGACCAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2ZHL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

51.282

100

0.513
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385
  pilF Neisseria gonorrhoeae MS11

40.541

94.872

0.385
  pilB Vibrio cholerae strain A1552

42.857

89.744

0.385