Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HG421_RS13585 Genome accession   NZ_CP051651
Coordinates   3217588..3218847 (+) Length   419 a.a.
NCBI ID   WP_169706822.1    Uniprot ID   A0A7Z2VBL7
Organism   Xanthomonas campestris pv. badrii strain NEB122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3212588..3223847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG421_RS13555 (HG421_13555) - 3213947..3214135 (-) 189 WP_169706817.1 hypothetical protein -
  HG421_RS13560 (HG421_13560) pilB 3214137..3214256 (-) 120 WP_029220459.1 hypothetical protein Machinery gene
  HG421_RS13565 (HG421_13565) - 3214325..3214513 (-) 189 WP_169706818.1 hypothetical protein -
  HG421_RS13570 (HG421_13570) pilB 3214515..3216248 (-) 1734 WP_169706819.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HG421_RS21435 (HG421_13575) pilA2 3216291..3216704 (-) 414 WP_169706820.1 pilin Machinery gene
  HG421_RS13580 (HG421_13580) comP 3216804..3217229 (-) 426 WP_169706821.1 pilin Machinery gene
  HG421_RS13585 (HG421_13585) pilC 3217588..3218847 (+) 1260 WP_169706822.1 type II secretion system F family protein Machinery gene
  HG421_RS13590 (HG421_13590) - 3218854..3219717 (+) 864 WP_169706823.1 A24 family peptidase -
  HG421_RS13595 (HG421_13595) coaE 3219731..3220339 (+) 609 WP_169706824.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45885.19 Da        Isoelectric Point: 10.2918

>NTDB_id=440252 HG421_RS13585 WP_169706822.1 3217588..3218847(+) (pilC) [Xanthomonas campestris pv. badrii strain NEB122]
MSVARSTLKKQAVDRTTTQPQTFLWEGTDKRGVKMKGEQASRNMNMLRAELRRQGINPSSVKPKPKPLFGAAGKKITSKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRQMVGQVRTDIEGGSSLNEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
LLLIVGGTITGFVFAYKRSPRMQHGMDRLILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=440252 HG421_RS13585 WP_169706822.1 3217588..3218847(+) (pilC) [Xanthomonas campestris pv. badrii strain NEB122]
ATGTCAGTTGCGCGCAGCACTCTTAAGAAGCAGGCGGTCGACCGCACCACCACGCAACCGCAGACGTTCCTGTGGGAGGG
AACGGACAAGCGCGGCGTGAAGATGAAAGGTGAACAAGCGTCGCGCAATATGAACATGTTGCGGGCCGAATTGCGGCGCC
AGGGCATCAACCCCAGTTCCGTCAAACCCAAGCCTAAGCCGCTGTTCGGGGCCGCTGGCAAGAAGATTACCTCCAAGGAC
ATTGCCTTCTTCAGTCGGCAGATGGCTACTATGATGAAGTCAGGGGTTCCAATTGTTGGCTCTCTCGAGATCATCGGAGA
AGGCCACAAGAATCCGCGAATGAGGCAAATGGTCGGGCAGGTCCGCACCGACATCGAGGGTGGCTCGTCACTCAACGAGG
CAATTAGCAAGCATCCCGTACAGTTTGACGAACTCTACCGAAACCTTGTGCGGGCGGGAGAAGGTGCAGGCGTCCTGGAA
ACGGTGCTGGATACGGTCGCCACTTATAAGGAAAATATTGAGGCGCTGAAGGGCAAGATCAAGAAGGCGCTTTTTTACCC
AGCAATGGTGGTTGCGGTGGCCCTCATCGTTAGTGCCATCCTGCTTATCTTCGTAGTCCCGCAGTTCGAAGAAGTGTTCA
AGGGCTTTGGCGCTGAACTTCCCGCCTTTACGCAGATGATCGTCGCGGCGTCGCGCTTCATGATCAGTTATTGGTGGCTA
CTGTTGCTCATCGTGGGCGGCACGATCACCGGTTTTGTGTTTGCCTACAAGCGCTCACCGCGCATGCAGCATGGGATGGA
TCGCCTCATCTTGAAGGTGCCTGTCATTGGTCAAATTATGCACAACAGTTCGATTGCGCGATTTGCGCGCACCACTGCCG
TGACCTTTAAGGCCGGCGTTCCCCTGGTGGAGGCACTTGGGATCGTCGCTGGCGCCACCGGCAACAAGGTCTACGAGGAA
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTCGGCTATCCCGTCAATATGGCGATGAAGCAGGTGAACCTGTTCCCGCA
TATGGTGATCCAGATGACCGCCATCGGTGAAGAGGCGGGCGCGCTGGACGCGATGCTGTTCAAGGTTGCGGAATACTTCG
AACAAGAAGTCAACAATGCCGTGGATGCGCTCAGCAGCTTGCTCGAACCAATGATCATGGTCTTCATCGGTACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2VBL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

51.97

96.897

0.504
  pilC Acinetobacter baylyi ADP1

50.98

97.375

0.496
  pilC Acinetobacter baumannii D1279779

50.245

97.375

0.489
  pilG Neisseria gonorrhoeae MS11

43.704

96.659

0.422
  pilG Neisseria meningitidis 44/76-A

43.21

96.659

0.418
  pilC Vibrio cholerae strain A1552

40.988

96.659

0.396
  pilC Vibrio campbellii strain DS40M4

39.702

96.181

0.382
  pilC Thermus thermophilus HB27

37.94

94.988

0.36