Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HG421_RS13550 Genome accession   NZ_CP051651
Coordinates   3212393..3213787 (+) Length   464 a.a.
NCBI ID   WP_169706816.1    Uniprot ID   A0A7Z2ZI11
Organism   Xanthomonas campestris pv. badrii strain NEB122     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3207393..3218787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG421_RS13530 (HG421_13530) - 3207888..3208091 (+) 204 WP_169706814.1 hypothetical protein -
  HG421_RS13535 (HG421_13535) sucD 3208162..3209037 (-) 876 WP_104539103.1 succinate--CoA ligase subunit alpha -
  HG421_RS13540 (HG421_13540) sucC 3209062..3210231 (-) 1170 WP_005992833.1 ADP-forming succinate--CoA ligase subunit beta -
  HG421_RS13545 (HG421_13545) - 3210464..3212077 (+) 1614 WP_169706815.1 HAMP domain-containing sensor histidine kinase -
  HG421_RS13550 (HG421_13550) pilR 3212393..3213787 (+) 1395 WP_169706816.1 sigma-54 dependent transcriptional regulator Regulator
  HG421_RS13555 (HG421_13555) - 3213947..3214135 (-) 189 WP_169706817.1 hypothetical protein -
  HG421_RS13560 (HG421_13560) pilB 3214137..3214256 (-) 120 WP_029220459.1 hypothetical protein Machinery gene
  HG421_RS13565 (HG421_13565) - 3214325..3214513 (-) 189 WP_169706818.1 hypothetical protein -
  HG421_RS13570 (HG421_13570) pilB 3214515..3216248 (-) 1734 WP_169706819.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HG421_RS21435 (HG421_13575) pilA2 3216291..3216704 (-) 414 WP_169706820.1 pilin Machinery gene
  HG421_RS13580 (HG421_13580) comP 3216804..3217229 (-) 426 WP_169706821.1 pilin Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50110.49 Da        Isoelectric Point: 6.2003

>NTDB_id=440248 HG421_RS13550 WP_169706816.1 3212393..3213787(+) (pilR) [Xanthomonas campestris pv. badrii strain NEB122]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSIAMEGLRTTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISAGDLRLPTHGGQRTAASPGAGA
AELREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=440248 HG421_RS13550 WP_169706816.1 3212393..3213787(+) (pilR) [Xanthomonas campestris pv. badrii strain NEB122]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCACCGAAATCGCCAGGCAATACCCGCAGACGCCGGTGGCG
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTAGAGGCCCTGAAGGCTGGCGCTTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGTGGCCTGGTCAAGCATGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCTCCGCCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGATCGCGATGGAAGGCCTGCGCACCACCATCGGCAAGGTCGCGCGT
AGCCAGGCACCGGTCTACATCGTGGGCGAATCCGGCGTGGGCAAGGAGCTGGTTGCGCGTACCATCCATGAGCAAGGCGC
TCGCGCGGCCGGCCCCTTTGTGCCGGTCAACTGCGGCGCCATTCCTGCAGAGTTGATGGAGAGCGAGTTTTTTGGGCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGAC
GAGGTCGCCGAACTGCCGCTGCAGATGCAGGTCAAGCTATTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGATGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGATGGCCGTT
TTCGGCACGACCTGTACTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCACTGCGCGAACGCGGCGGCGACCTGCCG
CAGCTGGCCGCCGCCATCATCGCGCGGCTGGCGCATAGCCACGGCCGCCCGATCCCCTTACTCACGCCCTCCGCACTCGA
TGCGCTGGACCAGTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAGG
ACGACCAGATCAGTGCCGGCGACCTGCGCCTGCCCACGCACGGCGGTCAACGTACGGCAGCAAGCCCCGGCGCCGGCGCG
GCCGAACTGCGCGAAGCCGTGGTCGATATCGATCCCGCCTCCGCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAGGAGAATCGCTGGAACAAGACCAGGACCGCCGCCCAGCTGGGTATCACGTTTCGGGCGT
TGCGCTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2ZI11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.948

100

0.642
  pilR Acinetobacter baumannii strain A118

49.247

100

0.494