Detailed information NTG0043286

Bioinformatically predicted

Overview

• Name: priA
• Type: Machinery gene
• Locus tag: SCIM_RS02115
• Genome accession: NC_018073
• Coordinates: 423329..425710 (+)
• Length: 793 a.a.
• NCBI ID: WP_003078264.1
• Uniprot ID: -
• Organism: Streptococcus intermedius JTH08
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 418329..430710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS02095 (SCIM_0365)	-	419817..420299 (-)	483	WP_003078346.1	S-ribosylhomocysteine lyase	-
SCIM_RS02100 (SCIM_0366)	-	420515..422122 (+)	1608	WP_004234071.1	ribonuclease Y	-
SCIM_RS02105 (SCIM_0367)	gmk	422304..422930 (+)	627	WP_003078308.1	guanylate kinase	-
SCIM_RS02110 (SCIM_0368)	rpoZ	422956..423270 (+)	315	WP_003028415.1	DNA-directed RNA polymerase subunit omega	-
SCIM_RS02115 (SCIM_0369)	priA	423329..425710 (+)	2382	WP_003078264.1	primosomal protein N'	Machinery gene
SCIM_RS02120 (SCIM_0370)	fmt	425771..426706 (+)	936	WP_003078292.1	methionyl-tRNA formyltransferase	-
SCIM_RS02125 (SCIM_0371)	rsmB	426696..428009 (+)	1314	WP_003078425.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
SCIM_RS02130 (SCIM_0372)	-	428028..428768 (+)	741	WP_003073671.1	Stp1/IreP family PP2C-type Ser/Thr phosphatase	-
SCIM_RS02135 (SCIM_0373)	stkP	428765..430639 (+)	1875	WP_003073669.1	Stk1 family PASTA domain-containing Ser/Thr kinase	Regulator

Sequence

Protein

• Length: 793 a.a.
• Molecular weight: 90351.78 Da
• Isoelectric Point: 9.0758

>NTDB_id=43286 SCIM_RS02115 WP_003078264.1 423329..425710(+) (priA) [Streptococcus intermedius JTH08]
MQIAKVIVDVPLMQTDRPYSYAVPKEFSTMLEIGMRVHVPFGKANRLIQGIVVGLVEERTIGLKEIVEVLDFTPVLNEEQ
LWLAEELRKSVFAYKISILKAMLPGFLNSSYDKILHAQPALTKEDRMLIFGNVDQRHFSSLDKTLQAKVMRLTRQGAIQL
EYQATDQKHIKTEKWYRVHHERLGQLDIPNRAKKKQALRSLLQNQTSLQRLADLKETFSREVIHYFIEQDVLQVIEKEVS
RSETYFENVSATSALVLNEEQKGAVQAITQQIGHTGKPFLLEGVTGSGKTEVYLQVIQEALSRGKTAIMLVPEISLTPQV
TNRFISRFGKKVAILHSGLSNGEKYDEWRKVERGEAQVVVGARSAIFAPLKNIGAIIVDEEHEASYKQDSNPRYHARDVA
LLRAKYNQAVLVLGSATPSLESRARAGKGVYHFLQLTKRANPQAQIPEVEIVDFRDYIGQNEASDFTPVLLEAIKDRLEK
KEQVVLMLNRRGYSSFVMCRECGTVDSCPNCDISLTLHMDTKSMNCHYCGFSKVIPHSCPNCSSRSIRYYGTGTQKAYDE
LAETFPQARILRMDVDTTRKKGSHEQILKKFEERHADILLGTQMIAKGLDFPNVTLVGVLNADTALNLPDFRSSERTFQL
LTQVAGRAGRAEKAGHVIIQSYNPRHYAIVFAKNQDYEGFYAYEMGVRRQLSYPPYYFTVGITLSHKIEAEVIKKSYEVL
NLIRSGLSNKVQVLGPTPKPIARTHNLYHYQLIIKYRFEEHLQDVLNQVLDWTQEKDNQNLRLIIDKEPQNFM

Nucleotide

• Length: 2382 bp

>NTDB_id=43286 SCIM_RS02115 WP_003078264.1 423329..425710(+) (priA) [Streptococcus intermedius JTH08]
ATGCAGATTGCAAAGGTCATTGTAGATGTTCCTCTAATGCAAACGGATAGACCTTATAGTTATGCAGTTCCGAAAGAATT
TTCGACTATGCTAGAAATTGGTATGCGTGTCCATGTGCCTTTTGGGAAAGCTAATCGCCTGATTCAAGGGATTGTTGTAG
GGTTAGTAGAAGAAAGGACGATAGGATTAAAAGAAATCGTAGAGGTATTGGACTTTACACCAGTTTTAAATGAGGAGCAA
CTGTGGCTAGCAGAAGAATTGAGAAAATCTGTCTTTGCTTACAAAATTTCCATCTTAAAAGCTATGTTGCCTGGTTTTCT
AAACTCCAGTTATGATAAAATTCTCCATGCTCAGCCCGCTTTGACGAAAGAAGATCGAATGCTTATTTTTGGCAATGTAG
ATCAGCGGCATTTTTCATCGCTTGATAAAACACTCCAAGCTAAGGTAATGCGTCTAACACGGCAAGGGGCGATTCAACTC
GAGTATCAGGCAACTGATCAAAAGCATATAAAAACAGAAAAATGGTATCGAGTCCATCATGAGAGATTAGGTCAGTTGGA
CATTCCTAATCGGGCGAAAAAAAAGCAAGCTTTGCGATCGCTTTTACAAAATCAGACCAGTTTGCAACGTCTAGCAGATC
TGAAAGAAACGTTTTCACGAGAGGTTATTCACTATTTTATAGAACAAGACGTTTTGCAAGTCATTGAAAAAGAGGTGAGT
CGCTCTGAAACATATTTTGAGAATGTTTCAGCGACGTCTGCATTGGTGTTAAATGAAGAGCAAAAAGGGGCTGTTCAAGC
TATTACTCAGCAAATCGGGCACACAGGGAAGCCATTTCTACTAGAAGGAGTAACAGGGAGTGGCAAAACGGAAGTGTATT
TGCAGGTTATTCAAGAAGCACTCAGCCGTGGTAAAACAGCTATTATGTTAGTTCCTGAAATCTCTTTGACACCGCAAGTT
ACTAATCGCTTTATTTCGCGTTTTGGAAAGAAAGTTGCTATTCTTCATTCGGGACTTTCTAACGGTGAGAAATATGATGA
ATGGCGCAAGGTTGAGCGAGGAGAAGCACAAGTTGTTGTTGGTGCGCGTTCTGCTATTTTTGCTCCATTAAAAAACATTG
GTGCGATTATCGTTGATGAGGAGCATGAGGCAAGCTACAAGCAAGACTCCAATCCACGCTATCATGCACGAGATGTTGCC
TTGCTACGTGCAAAGTACAATCAAGCCGTTTTAGTGCTAGGGTCAGCGACCCCGAGTTTAGAAAGTAGAGCGCGAGCTGG
CAAGGGAGTTTATCATTTTTTACAATTAACTAAACGGGCCAATCCGCAAGCTCAGATTCCTGAAGTAGAAATTGTGGATT
TTCGTGATTATATTGGGCAAAACGAAGCTAGTGATTTTACTCCGGTTCTTTTAGAAGCAATTAAAGACCGATTAGAAAAA
AAAGAGCAAGTTGTTTTGATGTTGAACCGACGAGGCTATTCTAGTTTTGTCATGTGTCGTGAGTGTGGTACGGTTGATAG
TTGCCCAAATTGTGACATTTCTCTGACCTTGCATATGGATACGAAAAGTATGAATTGCCACTATTGTGGTTTTTCAAAGG
TGATTCCTCATAGCTGTCCGAATTGTTCCAGTCGGAGCATTCGTTATTATGGAACGGGGACGCAAAAGGCTTACGATGAA
TTAGCAGAAACTTTTCCGCAAGCTCGAATTTTAAGAATGGATGTTGATACTACTCGTAAAAAAGGTAGTCACGAACAAAT
TTTGAAAAAATTTGAGGAAAGACATGCTGATATTTTGCTGGGAACACAGATGATTGCAAAAGGTCTAGATTTTCCAAATG
TGACTCTTGTAGGGGTGCTAAATGCAGATACAGCGTTAAATTTACCAGATTTTCGTTCATCTGAGCGAACCTTTCAACTT
TTAACTCAGGTTGCAGGACGTGCAGGACGAGCTGAAAAAGCAGGACATGTGATTATTCAAAGTTACAATCCAAGACATTA
TGCGATTGTCTTTGCAAAGAATCAGGATTATGAGGGTTTTTATGCCTATGAAATGGGTGTCAGGAGGCAATTATCCTATC
CACCTTATTACTTTACGGTGGGGATTACTTTATCACACAAAATAGAAGCTGAGGTTATTAAAAAGTCATACGAAGTGTTA
AACCTGATACGTTCTGGCTTATCAAATAAGGTTCAGGTATTGGGCCCAACTCCTAAGCCGATTGCCCGTACTCACAATCT
CTATCATTACCAATTGATTATTAAATATCGTTTTGAAGAGCATTTGCAAGATGTTTTAAATCAGGTTTTAGATTGGACAC
AAGAAAAGGACAATCAAAACTTACGTTTAATTATAGACAAGGAACCACAAAATTTTATGTGA

Domains

Predicted by InterProScan.

• Primosomal protein N C-terminal domain (PriA_C) (695-789)

• Type III restriction enzyme, res subunit (ResIII) (256-419)

• 3DNA-binding domain (3BD) (PriA_3primeBD) (5-104)

• Helicase conserved C-terminal domain (Helicase_C) (561-651)

• PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA) (508-533)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
priA	Bacillus subtilis subsp. subtilis str. 168	46.173	100	0.472