Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   SCIM_RS02060 Genome accession   NC_018073
Coordinates   412901..413503 (-) Length   200 a.a.
NCBI ID   WP_003073700.1    Uniprot ID   T1ZGT7
Organism   Streptococcus intermedius JTH08     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 407901..418503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS02045 (SCIM_0355) nadE 408257..409081 (+) 825 WP_003078365.1 ammonia-dependent NAD(+) synthetase -
  SCIM_RS02050 (SCIM_0356) pepC 409229..410566 (+) 1338 WP_003073704.1 aminopeptidase C -
  SCIM_RS02055 (SCIM_0357) pbp1a 410737..412908 (-) 2172 WP_003078321.1 penicillin-binding protein PBP1A -
  SCIM_RS02060 (SCIM_0358) recU 412901..413503 (-) 603 WP_003073700.1 Holliday junction resolvase RecU Machinery gene
  SCIM_RS02065 (SCIM_0359) - 413572..414093 (+) 522 WP_003073698.1 DUF1273 domain-containing protein -
  SCIM_RS02070 (SCIM_0360) gpsB 414169..414510 (+) 342 WP_003073696.1 cell division regulator GpsB -
  SCIM_RS02075 (SCIM_0361) - 414945..416099 (+) 1155 WP_003078398.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  SCIM_RS02080 (SCIM_0362) - 416112..417554 (+) 1443 WP_004234064.1 cell division site-positioning protein MapZ family protein -
  SCIM_RS02085 (SCIM_0363) ahpC 417658..418224 (+) 567 WP_003073689.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23238.73 Da        Isoelectric Point: 9.8985

>NTDB_id=43285 SCIM_RS02060 WP_003073700.1 412901..413503(-) (recU) [Streptococcus intermedius JTH08]
MVNYPHKVFSRNSLNFPKKKSVDFANRGMSFEKMINDTNDYYLSHELAVIHKKPTPIQIVKVDYPRRSRAKIVEAYFRQA
STTDYSGVYQGHYIDFEAKETRQKASMPMKNFHAHQIEHMEQVVKQGGICFVLLHFSTLNQTYLLPAPYLINFFKIDKGK
KSMPLDYIQRHGYSISQNGLPSIPYLEIIQQNLLGGKTNE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=43285 SCIM_RS02060 WP_003073700.1 412901..413503(-) (recU) [Streptococcus intermedius JTH08]
ATGGTCAACTATCCACATAAAGTTTTCTCGCGCAACTCATTGAATTTTCCTAAAAAGAAATCAGTTGATTTTGCCAATCG
AGGAATGTCTTTTGAAAAAATGATCAATGACACAAATGATTATTACCTTAGTCATGAGTTGGCAGTTATTCACAAAAAAC
CGACTCCCATTCAAATCGTAAAAGTGGATTATCCCAGACGTAGTCGGGCAAAAATCGTAGAAGCCTACTTTCGACAAGCC
TCTACAACAGACTATTCCGGTGTTTATCAGGGACATTATATAGATTTTGAAGCAAAGGAAACTCGTCAAAAGGCTTCCAT
GCCCATGAAAAATTTTCATGCACATCAAATCGAACACATGGAACAAGTCGTCAAACAAGGAGGAATTTGTTTCGTTTTAT
TACACTTTTCAACTTTAAATCAAACATACTTGCTTCCTGCTCCTTATCTGATTAACTTCTTCAAGATTGACAAAGGGAAA
AAATCCATGCCACTTGATTACATTCAACGACATGGATATTCTATCTCACAGAATGGCCTTCCTAGCATTCCTTATCTTGA
AATCATTCAACAAAACTTACTAGGTGGTAAAACAAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZGT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.746

100

0.51

Multiple sequence alignment