Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DSUI_RS02930 Genome accession   NC_016616
Coordinates   598978..600021 (+) Length   347 a.a.
NCBI ID   WP_014235715.1    Uniprot ID   A0A5H2YC97
Organism   Azospira oryzae PS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593978..605021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSUI_RS02900 (Dsui_0598) cowN 595192..595494 (-) 303 WP_014235709.1 N(2)-fixation sustaining protein CowN -
  DSUI_RS02905 (Dsui_0599) - 595631..596344 (+) 714 WP_014235710.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  DSUI_RS02910 (Dsui_0600) - 596387..596677 (-) 291 WP_014235711.1 DUF167 domain-containing protein -
  DSUI_RS02915 (Dsui_0601) - 596677..597249 (-) 573 WP_014235712.1 YggT family protein -
  DSUI_RS02920 (Dsui_0602) proC 597289..598101 (-) 813 WP_014235713.1 pyrroline-5-carboxylate reductase -
  DSUI_RS02925 (Dsui_0603) - 598115..598819 (-) 705 WP_014235714.1 YggS family pyridoxal phosphate-dependent enzyme -
  DSUI_RS02930 (Dsui_0604) pilT 598978..600021 (+) 1044 WP_014235715.1 type IV pilus twitching motility protein PilT Machinery gene
  DSUI_RS02935 (Dsui_0605) pilU 600038..601174 (+) 1137 WP_014235716.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  DSUI_RS02940 (Dsui_0606) - 601259..602431 (-) 1173 WP_014235717.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  DSUI_RS02945 (Dsui_0607) - 602443..602859 (-) 417 WP_014235718.1 CopD family protein -
  DSUI_RS02950 (Dsui_0608) - 602853..603758 (-) 906 WP_014235719.1 NAD-dependent epimerase/dehydratase family protein -
  DSUI_RS02955 (Dsui_0609) - 603809..604822 (+) 1014 WP_014235720.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38391.15 Da        Isoelectric Point: 6.9357

>NTDB_id=43123 DSUI_RS02930 WP_014235715.1 598978..600021(+) (pilT) [Azospira oryzae PS]
MDITELLAFGVKNKASDLHLSAGLPPMIRVHGDVRRINLPAMEHKDVHAMVYDIMNDGQRKTYEENLECDFSFEVPNLAR
FRVNAFVQHRGAGAVFRTIPSKVLSLEDLNAPKIFKEISEFPRGIVLVTGPTGSGKSTTLAAMVNHINENDYGHILTVED
PIEFVHEAKKCLINQREVGPHTLSFNNALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTVDRI
IDVFPAAEKEMIRAMLSESLRAVISQTLLKTKDGNGRVAAHEIMIGTPAIRNLIREAKIAQMYSAIQTGQQFGMQTLDQN
LTDLVRRNVISPAEARTKAVNKDMFGG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=43123 DSUI_RS02930 WP_014235715.1 598978..600021(+) (pilT) [Azospira oryzae PS]
ATGGACATCACCGAACTGCTCGCCTTCGGCGTCAAGAACAAGGCCTCCGACCTGCACCTCTCCGCCGGCCTGCCGCCCAT
GATCCGGGTCCACGGCGACGTGCGCCGCATCAACCTGCCGGCCATGGAGCACAAGGACGTGCACGCCATGGTGTACGACA
TCATGAACGACGGCCAGCGCAAGACCTACGAAGAGAACCTGGAGTGCGACTTCTCCTTCGAAGTGCCCAACCTGGCCCGT
TTCCGGGTCAATGCCTTCGTCCAGCATCGGGGCGCCGGCGCCGTCTTCCGTACCATTCCCTCCAAGGTGCTGAGCCTGGA
GGACCTCAACGCGCCGAAGATCTTCAAGGAGATTTCCGAATTCCCCCGGGGCATCGTGCTGGTCACCGGCCCTACCGGCT
CCGGTAAGTCCACCACCCTGGCGGCCATGGTGAACCACATCAACGAAAACGATTACGGCCACATCCTGACCGTGGAAGAC
CCCATCGAATTCGTGCACGAAGCCAAGAAGTGCCTCATCAACCAGCGGGAAGTGGGTCCCCACACCCTGTCCTTCAACAA
CGCCCTGCGCTCGGCCCTGCGGGAAGACCCGGACGTGATCCTGGTGGGCGAAATGCGCGACCTGGAAACCATCCGCCTGG
CCATGACGGCGGCGGAAACGGGCCACCTGGTGTTTGGCACCCTGCACACTTCTTCCGCCGCCAAGACGGTGGACCGGATC
ATCGACGTCTTCCCCGCGGCGGAGAAGGAAATGATCCGGGCCATGCTCTCCGAATCCCTGCGCGCCGTCATTTCCCAGAC
CCTGCTGAAGACCAAGGACGGCAACGGCCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCGGCCATTCGCAACCTGA
TCCGGGAAGCCAAGATCGCCCAGATGTATTCGGCCATCCAGACCGGCCAGCAGTTCGGCATGCAGACCCTGGACCAGAAC
CTCACCGACCTGGTGCGGCGCAACGTCATTTCGCCGGCGGAAGCCCGCACCAAGGCGGTCAACAAGGACATGTTCGGCGG
CTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5H2YC97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

79.42

99.424

0.79
  pilT Acinetobacter baumannii D1279779

79.42

99.424

0.79
  pilT Acinetobacter baumannii strain A118

79.42

99.424

0.79
  pilT Acinetobacter baylyi ADP1

75.652

99.424

0.752
  pilT Pseudomonas stutzeri DSM 10701

74.493

99.424

0.741
  pilT Pseudomonas aeruginosa PAK

75.811

97.695

0.741
  pilT Legionella pneumophila strain Lp02

73.913

99.424

0.735
  pilT Legionella pneumophila strain ERS1305867

73.913

99.424

0.735
  pilT Neisseria meningitidis 8013

73.178

98.847

0.723
  pilT Neisseria gonorrhoeae MS11

72.886

98.847

0.72
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

68.343

97.406

0.666
  pilT Vibrio cholerae strain A1552

68.343

97.406

0.666
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.014

99.424

0.507
  pilU Acinetobacter baylyi ADP1

43.155

96.83

0.418
  pilU Vibrio cholerae strain A1552

41.791

96.542

0.403
  pilU Pseudomonas stutzeri DSM 10701

41.493

96.542

0.401

Multiple sequence alignment