Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G7Z35_RS08165 Genome accession   NZ_CP049679
Coordinates   1597421..1598089 (+) Length   222 a.a.
NCBI ID   WP_215279288.1    Uniprot ID   -
Organism   Polynucleobacter paneuropaeus strain AP-Creno-20-G10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1592421..1603089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7Z35_RS08145 (G7Z35_08155) - 1593957..1594538 (-) 582 WP_112295121.1 DUF4390 domain-containing protein -
  G7Z35_RS08150 (G7Z35_08160) rsmB 1594535..1595893 (-) 1359 WP_227868593.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  G7Z35_RS08155 (G7Z35_08165) fmt 1595835..1596824 (-) 990 WP_215279287.1 methionyl-tRNA formyltransferase -
  G7Z35_RS08160 (G7Z35_08170) def 1596834..1597349 (-) 516 WP_112205752.1 peptide deformylase -
  G7Z35_RS08165 (G7Z35_08175) dprA 1597421..1598089 (+) 669 WP_215279288.1 DNA-processing protein DprA Machinery gene
  G7Z35_RS08170 (G7Z35_08180) - 1598307..1600970 (+) 2664 WP_215279289.1 DNA topoisomerase III -
  G7Z35_RS08275 (G7Z35_08185) mnmC 1600943..1602031 (-) 1089 Protein_1595 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23242.21 Da        Isoelectric Point: 8.4804

>NTDB_id=426501 G7Z35_RS08165 WP_215279288.1 1597421..1598089(+) (dprA) [Polynucleobacter paneuropaeus strain AP-Creno-20-G10]
MKNELPANSILPLALGATNYPKRLLDLADPPRTIYIAGKIELLSVPMIAIVGSRVASPEGIKNAGYFARTLASAGLLVIS
GLARGIDGASHRAALAVGQPTLAICGTGLDLTYPAEHHELANEIQKNGLLLGELPLGIGPKAFHFPRRNRLIAALAIGVL
VVEAAQQSGSLITARLALELGREVFAIPSSIHSPLSAGCHYLIGQGAKLVASPKEVLEELIY

Nucleotide


Download         Length: 669 bp        

>NTDB_id=426501 G7Z35_RS08165 WP_215279288.1 1597421..1598089(+) (dprA) [Polynucleobacter paneuropaeus strain AP-Creno-20-G10]
ATGAAAAATGAATTGCCAGCCAACTCTATTTTGCCCCTAGCTTTAGGTGCTACAAACTATCCCAAACGCCTTCTTGACTT
GGCCGATCCTCCGCGCACTATTTATATAGCAGGAAAAATAGAGTTGCTGAGTGTGCCCATGATCGCTATTGTTGGCTCTC
GGGTAGCTAGCCCCGAAGGAATCAAAAATGCCGGTTACTTTGCTAGAACCCTTGCCAGCGCGGGCCTACTAGTCATTTCT
GGCTTGGCTAGGGGCATTGATGGGGCTTCACACCGGGCAGCCCTTGCGGTGGGCCAACCCACATTAGCAATCTGCGGCAC
CGGCCTAGATCTCACCTACCCAGCTGAACATCATGAGTTAGCGAATGAAATTCAGAAAAATGGTCTTTTATTGGGCGAGC
TGCCCTTAGGCATCGGACCCAAGGCCTTTCACTTCCCGCGTCGCAACCGCCTGATTGCAGCACTGGCCATAGGGGTTTTA
GTGGTAGAAGCCGCTCAGCAATCGGGCTCACTTATTACGGCCCGCCTTGCATTGGAATTGGGCAGAGAAGTTTTTGCCAT
ACCCTCCTCAATTCACAGCCCCTTGTCTGCTGGATGTCACTATTTAATTGGGCAAGGGGCAAAACTGGTCGCCTCTCCAA
AAGAAGTTCTGGAAGAGCTGATTTATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(14-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

51.923

93.694

0.486
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.966

100

0.459
  dprA Vibrio campbellii strain DS40M4

48.558

93.694

0.455
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

45.455

99.099

0.45
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

45.455

99.099

0.45
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

45.455

99.099

0.45
  dprA/cilB/dalA Streptococcus pneumoniae D39

45.455

99.099

0.45
  dprA/cilB/dalA Streptococcus pneumoniae R6

45.455

99.099

0.45
  dprA/cilB/dalA Streptococcus mitis SK321

45.455

99.099

0.45
  dprA Neisseria meningitidis strain C311

48.78

92.342

0.45
  dprA Neisseria meningitidis MC58

48.78

92.342

0.45
  dprA Vibrio cholerae strain A1552

49.254

90.541

0.446
  dprA Acinetobacter baumannii strain A118

48.529

91.892

0.446
  dprA Acinetobacter baumannii D1279779

48.529

91.892

0.446
  dprA Glaesserella parasuis strain SC1401

46.919

95.045

0.446
  dprA Neisseria gonorrhoeae MS11

48.259

90.541

0.437
  dprA Neisseria gonorrhoeae strain FA1090

48.259

90.541

0.437
  dprA Streptococcus mutans UA159

44.091

99.099

0.437
  dprA Lactococcus lactis subsp. cremoris KW2

47.783

91.441

0.437
  dprA Thermus thermophilus HB27

46.154

93.694

0.432
  dprA Haemophilus influenzae Rd KW20

46.04

90.991

0.419
  dprA Acinetobacter baylyi ADP1

45.545

90.991

0.414
  dprA Bacillus subtilis subsp. subtilis str. 168

39.713

94.144

0.374