Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | FX986_RS10250 | Genome accession | NZ_CP047970 |
| Coordinates | 2439321..2440352 (+) | Length | 343 a.a. |
| NCBI ID | WP_077379438.1 | Uniprot ID | - |
| Organism | Cobetia marina strain GPM2 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2434321..2445352
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FX986_RS10225 | metW | 2434518..2435132 (-) | 615 | WP_077379447.1 | methionine biosynthesis protein MetW | - |
| FX986_RS10230 | metX | 2435125..2436318 (-) | 1194 | WP_191236471.1 | homoserine O-succinyltransferase MetX | - |
| FX986_RS10235 | - | 2436588..2437166 (-) | 579 | WP_077379444.1 | YggT family protein | - |
| FX986_RS10240 | proC | 2437336..2438178 (-) | 843 | WP_084209472.1 | pyrroline-5-carboxylate reductase | - |
| FX986_RS10245 | - | 2438373..2439125 (-) | 753 | WP_191236472.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| FX986_RS10250 | pilT | 2439321..2440352 (+) | 1032 | WP_077379438.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| FX986_RS10255 | pilU | 2440555..2441709 (+) | 1155 | WP_077379436.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| FX986_RS10260 | - | 2441816..2442973 (-) | 1158 | WP_191236473.1 | anhydro-N-acetylmuramic acid kinase | - |
| FX986_RS10265 | tyrS | 2443157..2444365 (+) | 1209 | WP_084209468.1 | tyrosine--tRNA ligase | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 37641.26 Da Isoelectric Point: 6.0550
>NTDB_id=418847 FX986_RS10250 WP_077379438.1 2439321..2440352(+) (pilT) [Cobetia marina strain GPM2]
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINVPSMDDKQVRALIYEIMNDKQRRDFEEFLETDFSFEVPGVSR
FRVNAFHQGRGAGAVFRTIPSEVLTMEDLGLGEAFRKMCMLPRGLILVTGPTGSGKSTTLAAMVDYINENKYDHILTIED
PVEFVHQSKRCLVNQREVHRDTHGFAPALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSATKTVDRI
IDVFPGEEKAMVRSMLSESLQGVIAQTLLKKVGGGRVAAHEIMLATPAIRNLIREDKVAQMYSSIQTGGALGMQTLDSAL
TRLLAEGLVTSEDAQAKAKGLLG
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINVPSMDDKQVRALIYEIMNDKQRRDFEEFLETDFSFEVPGVSR
FRVNAFHQGRGAGAVFRTIPSEVLTMEDLGLGEAFRKMCMLPRGLILVTGPTGSGKSTTLAAMVDYINENKYDHILTIED
PVEFVHQSKRCLVNQREVHRDTHGFAPALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSATKTVDRI
IDVFPGEEKAMVRSMLSESLQGVIAQTLLKKVGGGRVAAHEIMLATPAIRNLIREDKVAQMYSSIQTGGALGMQTLDSAL
TRLLAEGLVTSEDAQAKAKGLLG
Nucleotide
Download Length: 1032 bp
>NTDB_id=418847 FX986_RS10250 WP_077379438.1 2439321..2440352(+) (pilT) [Cobetia marina strain GPM2]
ATGGATATTACCGAACTGCTGGCTTTTTCGGCAAAACAGAACGCATCGGATCTGCACCTGTCCGCCGGCCTGCCACCGAT
GATTCGCGTCGATGGTGACGTACGACGCATCAACGTCCCTTCGATGGATGACAAGCAGGTGCGTGCGCTGATCTACGAGA
TCATGAACGACAAGCAGCGTCGCGACTTCGAGGAGTTCCTCGAGACGGATTTCTCCTTCGAGGTGCCGGGCGTCTCGCGC
TTCCGTGTCAATGCTTTCCATCAGGGGCGGGGGGCGGGTGCCGTCTTCCGTACCATCCCGTCGGAAGTGCTGACGATGGA
AGACCTGGGCCTCGGCGAGGCGTTTCGCAAGATGTGCATGCTGCCGCGTGGCCTGATTCTGGTCACCGGCCCGACGGGGT
CGGGCAAGTCGACCACGCTGGCGGCAATGGTCGATTACATCAACGAGAACAAGTACGACCACATTCTCACCATCGAGGAC
CCGGTCGAGTTCGTCCACCAGTCCAAGCGCTGCCTGGTCAACCAGCGTGAAGTGCATCGTGATACCCACGGCTTCGCGCC
GGCGCTGCGTTCGGCACTGCGTGAGGACCCGGACGTCATTCTGGTCGGCGAGCTGCGAGATCTCGAAACCATCCGTCTGG
CACTGACGGCCGCCGAGACAGGACACCTGGTCTTCGGCACCCTTCACACCACCTCGGCGACCAAGACCGTCGACCGCATC
ATCGACGTCTTCCCGGGCGAAGAGAAGGCGATGGTGCGTTCGATGCTATCCGAATCCCTGCAGGGGGTCATCGCGCAGAC
GCTGCTCAAGAAGGTGGGCGGCGGGCGCGTGGCAGCGCACGAGATCATGCTTGCCACTCCTGCCATCCGCAACCTGATCC
GTGAGGACAAGGTGGCGCAGATGTATTCCTCCATCCAGACCGGTGGTGCGTTGGGGATGCAGACGCTGGATTCGGCGCTG
ACGCGACTGTTGGCCGAGGGGCTGGTGACCAGCGAAGACGCGCAAGCGAAGGCCAAGGGGCTGCTGGGATAG
ATGGATATTACCGAACTGCTGGCTTTTTCGGCAAAACAGAACGCATCGGATCTGCACCTGTCCGCCGGCCTGCCACCGAT
GATTCGCGTCGATGGTGACGTACGACGCATCAACGTCCCTTCGATGGATGACAAGCAGGTGCGTGCGCTGATCTACGAGA
TCATGAACGACAAGCAGCGTCGCGACTTCGAGGAGTTCCTCGAGACGGATTTCTCCTTCGAGGTGCCGGGCGTCTCGCGC
TTCCGTGTCAATGCTTTCCATCAGGGGCGGGGGGCGGGTGCCGTCTTCCGTACCATCCCGTCGGAAGTGCTGACGATGGA
AGACCTGGGCCTCGGCGAGGCGTTTCGCAAGATGTGCATGCTGCCGCGTGGCCTGATTCTGGTCACCGGCCCGACGGGGT
CGGGCAAGTCGACCACGCTGGCGGCAATGGTCGATTACATCAACGAGAACAAGTACGACCACATTCTCACCATCGAGGAC
CCGGTCGAGTTCGTCCACCAGTCCAAGCGCTGCCTGGTCAACCAGCGTGAAGTGCATCGTGATACCCACGGCTTCGCGCC
GGCGCTGCGTTCGGCACTGCGTGAGGACCCGGACGTCATTCTGGTCGGCGAGCTGCGAGATCTCGAAACCATCCGTCTGG
CACTGACGGCCGCCGAGACAGGACACCTGGTCTTCGGCACCCTTCACACCACCTCGGCGACCAAGACCGTCGACCGCATC
ATCGACGTCTTCCCGGGCGAAGAGAAGGCGATGGTGCGTTCGATGCTATCCGAATCCCTGCAGGGGGTCATCGCGCAGAC
GCTGCTCAAGAAGGTGGGCGGCGGGCGCGTGGCAGCGCACGAGATCATGCTTGCCACTCCTGCCATCCGCAACCTGATCC
GTGAGGACAAGGTGGCGCAGATGTATTCCTCCATCCAGACCGGTGGTGCGTTGGGGATGCAGACGCTGGATTCGGCGCTG
ACGCGACTGTTGGCCGAGGGGCTGGTGACCAGCGAAGACGCGCAAGCGAAGGCCAAGGGGCTGCTGGGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
84.071 |
98.834 |
0.831 |
| pilT | Pseudomonas aeruginosa PAK |
82.006 |
98.834 |
0.81 |
| pilT | Acinetobacter baumannii D1279779 |
78.171 |
98.834 |
0.773 |
| pilT | Acinetobacter baumannii strain A118 |
78.171 |
98.834 |
0.773 |
| pilT | Acinetobacter nosocomialis M2 |
77.876 |
98.834 |
0.77 |
| pilT | Acinetobacter baylyi ADP1 |
77.581 |
98.834 |
0.767 |
| pilT | Legionella pneumophila strain Lp02 |
72.485 |
98.542 |
0.714 |
| pilT | Legionella pneumophila strain ERS1305867 |
72.485 |
98.542 |
0.714 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
70.92 |
98.251 |
0.697 |
| pilT | Vibrio cholerae strain A1552 |
70.92 |
98.251 |
0.697 |
| pilT | Neisseria meningitidis 8013 |
65.396 |
99.417 |
0.65 |
| pilT | Neisseria gonorrhoeae MS11 |
65.103 |
99.417 |
0.647 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.327 |
98.834 |
0.507 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.687 |
97.668 |
0.417 |
| pilU | Vibrio cholerae strain A1552 |
41.493 |
97.668 |
0.405 |
| pilU | Acinetobacter baylyi ADP1 |
39.118 |
99.125 |
0.388 |