Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SynPROS91_RS00095 Genome accession   NZ_CP047961
Coordinates   21913..22962 (-) Length   349 a.a.
NCBI ID   WP_255440007.1    Uniprot ID   -
Organism   Synechococcus sp. PROS-9-1     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16913..27962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynPROS91_RS00070 (SynPROS91_00014) - 17260..17796 (+) 537 WP_186517296.1 RNA-binding protein -
  SynPROS91_RS00075 (SynPROS91_00015) dusA 17815..18819 (-) 1005 WP_186517298.1 tRNA dihydrouridine(20/20a) synthase DusA -
  SynPROS91_RS00080 (SynPROS91_00016) msrB 18886..19398 (+) 513 WP_186517300.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SynPROS91_RS00085 (SynPROS91_00017) - 19433..20641 (+) 1209 WP_370586809.1 NAD(P)/FAD-dependent oxidoreductase -
  SynPROS91_RS00090 (SynPROS91_00018) - 20616..21896 (-) 1281 WP_186517303.1 type II secretion system F family protein -
  SynPROS91_RS00095 (SynPROS91_00019) pilT 21913..22962 (-) 1050 WP_255440007.1 type IV pilus twitching motility protein PilT Machinery gene
  SynPROS91_RS00100 (SynPROS91_00020) pilB/pilB1 22850..24769 (-) 1920 WP_370586773.1 GspE/PulE family protein Machinery gene
  SynPROS91_RS00105 (SynPROS91_00021) grpE 24849..25574 (+) 726 WP_255439830.1 nucleotide exchange factor GrpE -
  SynPROS91_RS00110 (SynPROS91_00022) dnaJ 25617..26747 (+) 1131 WP_186517309.1 molecular chaperone DnaJ -
  SynPROS91_RS00115 (SynPROS91_00023) - 26751..26990 (+) 240 WP_186517311.1 sulfurtransferase TusA family protein -
  SynPROS91_RS00120 (SynPROS91_00024) rsgA 27010..27891 (+) 882 WP_186519239.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38246.43 Da        Isoelectric Point: 6.1704

>NTDB_id=418770 SynPROS91_RS00095 WP_255440007.1 21913..22962(-) (pilT) [Synechococcus sp. PROS-9-1]
MEQLVNGGGSDLHIASGQPPYGRFSGELRPMQEESLSEEGCNRLIFSMLNNSQRKTLEQTWELDCAYGLKGVARFRVNVY
RQKGSYAACLRALGSKIPSVELLNLPPVVVETSKRPRGLVLVTGPTGSGKTTTLAALLDHINHTRAEHILTIEDPIEFVY
TSDRSLVHQRQLNEDTRSFANALRAALREDPDVILVGEMRDLETIQLAISAAETGHLVFGTLHTSSAAQTVDRMVDVFPP
GQQTQIRVQLSGSLTAVFSQTLCRRQSPAPGQFGRVMAQEIMINTPAIANLIREGKTAQLYSQIQTGGERGMQTLERALA
DLIDQGEISLDEGLSKASKPAELERLINN

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=418770 SynPROS91_RS00095 WP_255440007.1 21913..22962(-) (pilT) [Synechococcus sp. PROS-9-1]
ATGGAACAGTTGGTGAACGGAGGCGGAAGCGACCTCCACATCGCCAGCGGACAGCCGCCATACGGGCGATTCAGTGGCGA
ACTGCGGCCGATGCAGGAGGAATCGCTCAGTGAAGAAGGCTGCAACCGCCTGATCTTTTCCATGCTCAATAACAGCCAAC
GCAAAACACTCGAACAAACGTGGGAGCTGGATTGTGCGTATGGATTGAAAGGGGTCGCCCGGTTTCGGGTGAATGTGTAC
CGGCAGAAAGGCAGCTATGCCGCCTGCTTGCGTGCTCTTGGAAGCAAAATCCCCAGCGTTGAGTTGCTGAATCTGCCTCC
CGTCGTAGTGGAAACCAGCAAACGCCCCCGTGGTCTTGTCCTGGTCACGGGTCCAACTGGCTCAGGTAAAACCACCACGC
TCGCAGCACTTCTCGATCACATCAACCACACGCGCGCTGAACACATCCTCACGATCGAAGACCCGATCGAATTCGTTTAC
ACCAGTGATCGCAGCTTGGTGCATCAACGCCAACTCAACGAGGACACTCGCAGTTTTGCCAACGCTCTGCGCGCTGCTCT
ACGCGAAGACCCAGACGTGATTTTGGTGGGTGAAATGCGTGATCTCGAAACAATTCAACTGGCGATCAGCGCTGCGGAGA
CTGGGCATTTGGTGTTTGGAACCTTGCACACCAGTTCTGCAGCTCAGACCGTTGATCGAATGGTGGATGTGTTTCCACCT
GGCCAGCAAACCCAGATCCGCGTGCAACTCTCAGGAAGCCTGACTGCGGTGTTCTCTCAAACGCTTTGCCGACGCCAAAG
TCCTGCACCTGGGCAGTTCGGTCGCGTGATGGCTCAAGAAATCATGATCAATACCCCAGCCATCGCAAATTTGATCCGTG
AAGGCAAAACAGCTCAGCTGTATTCCCAAATTCAAACCGGCGGCGAACGCGGCATGCAAACCCTGGAAAGAGCGCTTGCC
GATCTGATTGATCAGGGCGAGATCAGCCTTGATGAAGGGCTCAGCAAAGCCAGCAAACCCGCTGAACTGGAACGCCTGAT
CAACAACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

54.655

95.415

0.521
  pilT Pseudomonas aeruginosa PAK

54.354

95.415

0.519
  pilT Acinetobacter nosocomialis M2

51.786

96.275

0.499
  pilT Acinetobacter baumannii D1279779

51.786

96.275

0.499
  pilT Acinetobacter baumannii strain A118

51.786

96.275

0.499
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.585

97.994

0.496
  pilT Legionella pneumophila strain ERS1305867

52.923

93.123

0.493
  pilT Legionella pneumophila strain Lp02

52.923

93.123

0.493
  pilT Acinetobacter baylyi ADP1

51.19

96.275

0.493
  pilT Neisseria meningitidis 8013

52.96

91.977

0.487
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.595

96.275

0.487
  pilT Vibrio cholerae strain A1552

50.595

96.275

0.487
  pilT Neisseria gonorrhoeae MS11

52.648

91.977

0.484
  pilU Pseudomonas stutzeri DSM 10701

38.663

98.567

0.381
  pilU Vibrio cholerae strain A1552

37.931

99.713

0.378
  pilU Acinetobacter baylyi ADP1

38.166

96.848

0.37

Multiple sequence alignment