Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   SynPROS91_RS00100 Genome accession   NZ_CP047961
Coordinates   22850..24769 (-) Length   639 a.a.
NCBI ID   WP_370586773.1    Uniprot ID   A0A7G8JIQ8
Organism   Synechococcus sp. PROS-9-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17850..29769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynPROS91_RS00080 (SynPROS91_00016) msrB 18886..19398 (+) 513 WP_186517300.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SynPROS91_RS00085 (SynPROS91_00017) - 19433..20641 (+) 1209 WP_370586809.1 NAD(P)/FAD-dependent oxidoreductase -
  SynPROS91_RS00090 (SynPROS91_00018) - 20616..21896 (-) 1281 WP_186517303.1 type II secretion system F family protein -
  SynPROS91_RS00095 (SynPROS91_00019) pilT 21913..22962 (-) 1050 WP_255440007.1 type IV pilus twitching motility protein PilT Machinery gene
  SynPROS91_RS00100 (SynPROS91_00020) pilB/pilB1 22850..24769 (-) 1920 WP_370586773.1 GspE/PulE family protein Machinery gene
  SynPROS91_RS00105 (SynPROS91_00021) grpE 24849..25574 (+) 726 WP_255439830.1 nucleotide exchange factor GrpE -
  SynPROS91_RS00110 (SynPROS91_00022) dnaJ 25617..26747 (+) 1131 WP_186517309.1 molecular chaperone DnaJ -
  SynPROS91_RS00115 (SynPROS91_00023) - 26751..26990 (+) 240 WP_186517311.1 sulfurtransferase TusA family protein -
  SynPROS91_RS00120 (SynPROS91_00024) rsgA 27010..27891 (+) 882 WP_186519239.1 ribosome small subunit-dependent GTPase A -
  SynPROS91_RS00125 (SynPROS91_00025) - 27866..28207 (-) 342 WP_186517313.1 YbaB/EbfC family nucleoid-associated protein -
  SynPROS91_RS00130 (SynPROS91_00026) murB 28232..29170 (-) 939 WP_186517315.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 639 a.a.        Molecular weight: 69586.12 Da        Isoelectric Point: 6.2536

>NTDB_id=418771 SynPROS91_RS00100 WP_370586773.1 22850..24769(-) (pilB/pilB1) [Synechococcus sp. PROS-9-1]
MSADSTRMPLPPALPAKLISEAELAAGEALLQSGQVLDLETWKQLQALPIHLTNDGLMVAIASSSDRDSREQLKQVLRSH
GYISKLVLANAADLKRILDPQAVESDSKINQTLISETAKSLLDGFDVEGILNADPDEAEIQSNSASSLDLNPSSANASPV
VTLVDRILAKALDMNASDIHVEPQSSGLQIRLRKDGVLTNLTQPLPTKLIPAITSRFKIMADLDIAERRQAQDGRIRRQY
KGRTVDFRVNSLPSRYGEKICLRLLDSQSTQLGLDKLISNPATLEIVRTLGSKPFGMILVTGPTGSGKSTTLYSLLAERN
EPGINISTVEDPIEYTLPGITQCQVNREKGFDFSTALRAFMRQDPDVLLVGETRDQETAKTAIEAALTGHLVLTTLHCND
APSAIARLDEMGVEPFMVSASLLGIVSQRLLRRVCSDCRIPYHPDSQELGRFGLMTSHEGNVTFFKAKHHEGPETPCPNC
QGTGYKGRIGVYEVLRMNEALAASVAKGATTDLVRQLALEGGMKTLLGYSLDLVREGHTTLEEVDRMVLTDAGLESEQRA
RALSTVTCRGCGGGLQEGWLECPYCLTPFSESSEHGTNDRRPDGTVGERRRKRPPHRQRTAAIRAIQWRTAADAGGIAQ

Nucleotide


Download         Length: 1920 bp        

>NTDB_id=418771 SynPROS91_RS00100 WP_370586773.1 22850..24769(-) (pilB/pilB1) [Synechococcus sp. PROS-9-1]
ATGAGCGCCGACTCCACCCGCATGCCGCTACCGCCTGCTCTGCCGGCAAAGCTGATTTCAGAGGCAGAGCTCGCCGCTGG
AGAAGCACTCCTTCAATCCGGGCAGGTGTTGGACCTTGAAACCTGGAAGCAACTTCAAGCGCTCCCCATCCATCTCACCA
ACGACGGCCTCATGGTGGCCATCGCAAGCAGCAGCGACCGAGACAGTCGAGAACAACTCAAGCAGGTTTTAAGAAGCCAT
GGCTACATCTCCAAGCTTGTGCTGGCCAATGCAGCGGATCTAAAACGAATTCTTGATCCACAAGCAGTTGAATCAGATTC
GAAGATTAATCAAACATTAATTAGCGAAACAGCAAAATCACTTCTCGATGGTTTTGATGTTGAAGGAATTTTAAATGCCG
ATCCTGATGAAGCCGAAATTCAGAGCAATTCAGCCTCGTCACTGGACCTAAACCCATCAAGTGCCAATGCATCTCCCGTT
GTCACATTGGTGGATCGTATTTTAGCAAAAGCATTAGACATGAATGCAAGTGACATTCATGTAGAGCCACAATCATCTGG
CTTACAAATTAGACTTAGAAAGGATGGTGTGCTCACCAATCTAACGCAACCACTACCCACTAAATTAATACCAGCCATTA
CCTCTCGCTTCAAGATCATGGCCGATCTTGATATCGCTGAACGAAGGCAAGCGCAGGATGGACGCATCCGTAGACAGTAC
AAAGGACGAACTGTTGACTTCCGTGTCAATAGCCTGCCTAGCCGCTACGGCGAAAAGATTTGCCTGCGCTTACTTGACAG
CCAATCAACTCAATTAGGACTGGATAAGCTCATCTCCAATCCCGCCACACTCGAGATTGTACGAACCCTTGGCTCAAAAC
CTTTCGGCATGATTCTTGTGACCGGTCCGACAGGATCTGGTAAATCCACAACTCTTTATTCGCTGTTAGCGGAGCGTAAC
GAACCCGGGATCAATATCTCCACCGTAGAAGATCCAATTGAATACACATTGCCTGGTATTACTCAATGTCAAGTTAATCG
TGAGAAAGGATTTGACTTCAGCACGGCTCTTCGCGCCTTTATGCGCCAAGACCCAGATGTGCTGTTGGTGGGTGAGACCC
GCGATCAGGAAACAGCGAAAACTGCCATCGAAGCAGCTCTGACAGGACACCTGGTCTTGACCACCCTGCACTGCAACGAT
GCCCCAAGCGCCATCGCCCGACTCGACGAAATGGGCGTTGAACCGTTCATGGTGAGCGCATCCTTGCTGGGCATCGTTTC
TCAACGCTTGCTCAGGCGCGTATGCAGCGATTGCCGGATCCCATACCACCCAGATTCCCAAGAATTAGGTCGCTTTGGCC
TCATGACGAGCCATGAAGGCAATGTGACCTTTTTCAAAGCCAAACACCACGAAGGACCAGAAACGCCATGCCCCAACTGC
CAGGGCACCGGTTACAAGGGCCGTATCGGTGTGTACGAAGTGCTGCGCATGAATGAAGCCCTGGCCGCATCTGTCGCCAA
AGGTGCAACCACTGATCTCGTTCGCCAACTAGCTCTTGAAGGAGGGATGAAAACCTTGCTTGGCTACAGCCTTGATCTCG
TGCGAGAAGGTCACACCACACTGGAAGAGGTGGACCGGATGGTGTTAACGGATGCGGGCCTGGAATCAGAACAACGCGCC
AGGGCCCTCAGCACAGTGACTTGCCGTGGATGTGGTGGCGGACTTCAAGAAGGTTGGCTGGAATGCCCGTATTGCCTGAC
ACCCTTCAGTGAGAGCTCCGAGCATGGAACGAATGATCGAAGACCTGATGGAACAGTTGGTGAACGGAGGCGGAAGCGAC
CTCCACATCGCCAGCGGACAGCCGCCATACGGGCGATTCAGTGGCGAACTGCGGCCGATGCAGGAGGAATCGCTCAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(167-433)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(19-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8JIQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

55.106

88.889

0.49

Multiple sequence alignment