Detailed information NTG0413121

Bioinformatically predicted

Overview

• Name: sxy/tfoX
• Type: Regulator
• Locus tag: GTP13_RS09715
• Genome accession: NZ_CP047378
• Coordinates: 1989597..1990226 (+)
• Length: 209 a.a.
• NCBI ID: WP_000839153.1
• Uniprot ID: A0A9Q6Y251
• Organism: Escherichia coli strain CAU16175
• Function: positive regulator of competence gene (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1989797..2004134	1989597..1990226	flank	-429

Gene organization within MGE regions

Location: 1989597..2004134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTP13_RS09715	sxy/tfoX	1989597..1990226 (+)	630	WP_000839153.1	CRP-S regulon transcriptional coactivator Sxy	Regulator
GTP13_RS09720	yccS	1990189..1992351 (-)	2163	WP_000875023.1	YccS family putative transporter	-
GTP13_RS09725	yccF	1992361..1992807 (-)	447	WP_001261235.1	YccF domain-containing protein	-
GTP13_RS09730	helD	1992930..1994984 (+)	2055	WP_167582990.1	DNA helicase IV	-
GTP13_RS09735	mgsA	1995016..1995474 (-)	459	WP_032280666.1	methylglyoxal synthase	-
GTP13_RS09740	yccT	1995570..1996232 (-)	663	WP_000847791.1	DUF2057 family protein	-
GTP13_RS09745	yccU	1996405..1996818 (+)	414	WP_000665217.1	CoA-binding protein	-
GTP13_RS09750	hspQ	1996863..1997180 (-)	318	WP_001295356.1	heat shock protein HspQ	-
GTP13_RS09755	rlmI	1997238..1998428 (-)	1191	WP_000116302.1	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	-
GTP13_RS09760	yccX	1998523..1998801 (+)	279	WP_000048244.1	acylphosphatase	-
GTP13_RS09765	tusE	1998798..1999127 (-)	330	WP_000904442.1	sulfurtransferase TusE	-
GTP13_RS09770	yccA	1999218..1999877 (-)	660	WP_000375138.1	FtsH protease modulator YccA	-
GTP13_RS09775	-	2000285..2001304 (-)	1020	WP_024227504.1	tyrosine-type recombinase/integrase	-
GTP13_RS09780	-	2001273..2001524 (-)	252	WP_000273158.1	DUF4224 domain-containing protein	-
GTP13_RS09785	-	2001591..2004071 (-)	2481	WP_106505231.1	exonuclease	-

Sequence

Protein

• Length: 209 a.a.
• Molecular weight: 24147.02 Da
• Isoelectric Point: 9.2180

>NTDB_id=413121 GTP13_RS09715 WP_000839153.1 1989597..1990226(+) (sxy/tfoX) [Escherichia coli strain CAU16175]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide

• Length: 630 bp

>NTDB_id=413121 GTP13_RS09715 WP_000839153.1 1989597..1990226(+) (sxy/tfoX) [Escherichia coli strain CAU16175]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

• TfoX N-terminal domain (TfoX_N) (14-106)

• TfoX C-terminal domain (TfoX_C) (116-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sxy/tfoX	Escherichia coli BW25113 strain K-12	100	100	1