Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GQR90_RS00885 | Genome accession | NZ_CP047025 |
| Coordinates | 189875..190906 (+) | Length | 343 a.a. |
| NCBI ID | WP_158772503.1 | Uniprot ID | - |
| Organism | Cobetia sp. L2A1 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 184875..195906
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQR90_RS00860 | metW | 185222..185836 (-) | 615 | WP_158772498.1 | methionine biosynthesis protein MetW | - |
| GQR90_RS00865 | - | 185829..187022 (-) | 1194 | WP_158772499.1 | homoserine O-acetyltransferase | - |
| GQR90_RS00870 | - | 187287..187868 (-) | 582 | WP_158772500.1 | YggT family protein | - |
| GQR90_RS00875 | proC | 188004..188846 (-) | 843 | WP_158772501.1 | pyrroline-5-carboxylate reductase | - |
| GQR90_RS00880 | - | 188956..189693 (-) | 738 | WP_158772502.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| GQR90_RS00885 | pilT | 189875..190906 (+) | 1032 | WP_158772503.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GQR90_RS00890 | pilU | 191039..192193 (+) | 1155 | WP_158772504.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GQR90_RS00895 | - | 192328..193476 (-) | 1149 | WP_158772505.1 | anhydro-N-acetylmuramic acid kinase | - |
| GQR90_RS00900 | tyrS | 193620..194828 (+) | 1209 | WP_158772506.1 | tyrosine--tRNA ligase | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 37782.41 Da Isoelectric Point: 6.2435
>NTDB_id=409956 GQR90_RS00885 WP_158772503.1 189875..190906(+) (pilT) [Cobetia sp. L2A1]
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINVPSMDDKQVRSLIYEIMNDKQRRDFEEFLETDFSFEVPGVSR
FRVNAFHQGRGAGAVFRTIPSEVLTMEDLGLGEVFRKMCMLPRGLILVTGPTGSGKSTTLAAMVDYINENKYDHILTIED
PVEFVHQSKRCLINQREVHRDTHGFAPALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSATKTVDRI
IDVFPGDEKSMVRSMLSESLQGVIAQTLLKKVGGGRVAAHEILLATPAIRNLIREDKVAQMYSSIQTGGALGMQTLDSAL
SRLLAEGLVTREEAQAKAKGLLS
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDVRRINVPSMDDKQVRSLIYEIMNDKQRRDFEEFLETDFSFEVPGVSR
FRVNAFHQGRGAGAVFRTIPSEVLTMEDLGLGEVFRKMCMLPRGLILVTGPTGSGKSTTLAAMVDYINENKYDHILTIED
PVEFVHQSKRCLINQREVHRDTHGFAPALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSATKTVDRI
IDVFPGDEKSMVRSMLSESLQGVIAQTLLKKVGGGRVAAHEILLATPAIRNLIREDKVAQMYSSIQTGGALGMQTLDSAL
SRLLAEGLVTREEAQAKAKGLLS
Nucleotide
Download Length: 1032 bp
>NTDB_id=409956 GQR90_RS00885 WP_158772503.1 189875..190906(+) (pilT) [Cobetia sp. L2A1]
ATGGATATTACCGAATTGCTGGCTTTTTCGGCAAAGCAGAACGCCTCGGACCTGCACCTGTCGGCAGGTCTGCCTCCGAT
GATACGTGTCGATGGTGATGTACGGCGTATCAATGTCCCGTCCATGGATGACAAGCAGGTACGGTCGCTGATCTACGAGA
TCATGAATGACAAGCAGCGTCGTGATTTCGAAGAATTCCTCGAGACCGATTTCTCCTTCGAGGTGCCTGGTGTATCGCGC
TTTCGTGTTAACGCCTTTCATCAAGGGCGTGGAGCCGGTGCCGTTTTCCGTACCATCCCCTCTGAAGTGTTAACGATGGA
AGACCTGGGGTTGGGCGAGGTATTCCGCAAGATGTGCATGTTGCCTCGAGGACTGATTCTGGTCACGGGGCCGACGGGGT
CGGGTAAGTCGACCACGCTGGCGGCGATGGTCGACTATATCAACGAGAACAAATACGACCATATTCTGACGATCGAGGAT
CCGGTTGAGTTTGTGCATCAGTCCAAGCGCTGCTTGATCAATCAACGTGAGGTGCACCGGGATACTCATGGTTTTGCACC
CGCCTTGCGTTCGGCATTGCGAGAAGATCCTGACGTCATTCTGGTGGGTGAGTTGCGGGACCTGGAAACTATCCGCCTTG
CACTGACCGCTGCCGAGACTGGCCACTTGGTGTTCGGTACGCTGCATACGACCTCAGCAACCAAGACGGTTGACCGCATC
ATTGATGTCTTCCCGGGCGATGAGAAGTCGATGGTGCGCTCGATGCTCTCCGAATCACTGCAGGGGGTTATCGCTCAGAC
ATTGCTCAAGAAAGTGGGTGGTGGCCGTGTAGCAGCACACGAGATACTGCTTGCAACGCCTGCCATTCGTAACCTGATTC
GTGAGGATAAGGTGGCGCAGATGTATTCTTCCATTCAGACCGGCGGCGCGCTAGGTATGCAAACACTGGACTCCGCGTTG
AGTCGTTTGCTAGCCGAAGGGCTGGTGACCAGAGAAGAGGCTCAGGCGAAAGCCAAAGGGCTCTTGAGCTGA
ATGGATATTACCGAATTGCTGGCTTTTTCGGCAAAGCAGAACGCCTCGGACCTGCACCTGTCGGCAGGTCTGCCTCCGAT
GATACGTGTCGATGGTGATGTACGGCGTATCAATGTCCCGTCCATGGATGACAAGCAGGTACGGTCGCTGATCTACGAGA
TCATGAATGACAAGCAGCGTCGTGATTTCGAAGAATTCCTCGAGACCGATTTCTCCTTCGAGGTGCCTGGTGTATCGCGC
TTTCGTGTTAACGCCTTTCATCAAGGGCGTGGAGCCGGTGCCGTTTTCCGTACCATCCCCTCTGAAGTGTTAACGATGGA
AGACCTGGGGTTGGGCGAGGTATTCCGCAAGATGTGCATGTTGCCTCGAGGACTGATTCTGGTCACGGGGCCGACGGGGT
CGGGTAAGTCGACCACGCTGGCGGCGATGGTCGACTATATCAACGAGAACAAATACGACCATATTCTGACGATCGAGGAT
CCGGTTGAGTTTGTGCATCAGTCCAAGCGCTGCTTGATCAATCAACGTGAGGTGCACCGGGATACTCATGGTTTTGCACC
CGCCTTGCGTTCGGCATTGCGAGAAGATCCTGACGTCATTCTGGTGGGTGAGTTGCGGGACCTGGAAACTATCCGCCTTG
CACTGACCGCTGCCGAGACTGGCCACTTGGTGTTCGGTACGCTGCATACGACCTCAGCAACCAAGACGGTTGACCGCATC
ATTGATGTCTTCCCGGGCGATGAGAAGTCGATGGTGCGCTCGATGCTCTCCGAATCACTGCAGGGGGTTATCGCTCAGAC
ATTGCTCAAGAAAGTGGGTGGTGGCCGTGTAGCAGCACACGAGATACTGCTTGCAACGCCTGCCATTCGTAACCTGATTC
GTGAGGATAAGGTGGCGCAGATGTATTCTTCCATTCAGACCGGCGGCGCGCTAGGTATGCAAACACTGGACTCCGCGTTG
AGTCGTTTGCTAGCCGAAGGGCTGGTGACCAGAGAAGAGGCTCAGGCGAAAGCCAAAGGGCTCTTGAGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
83.776 |
98.834 |
0.828 |
| pilT | Pseudomonas aeruginosa PAK |
81.121 |
98.834 |
0.802 |
| pilT | Acinetobacter baumannii D1279779 |
77.876 |
98.834 |
0.77 |
| pilT | Acinetobacter baumannii strain A118 |
77.876 |
98.834 |
0.77 |
| pilT | Acinetobacter nosocomialis M2 |
77.581 |
98.834 |
0.767 |
| pilT | Acinetobacter baylyi ADP1 |
77.286 |
98.834 |
0.764 |
| pilT | Legionella pneumophila strain Lp02 |
71.598 |
98.542 |
0.706 |
| pilT | Legionella pneumophila strain ERS1305867 |
71.598 |
98.542 |
0.706 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
71.217 |
98.251 |
0.7 |
| pilT | Vibrio cholerae strain A1552 |
71.217 |
98.251 |
0.7 |
| pilT | Neisseria meningitidis 8013 |
65.982 |
99.417 |
0.656 |
| pilT | Neisseria gonorrhoeae MS11 |
65.689 |
99.417 |
0.653 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.622 |
98.834 |
0.51 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.985 |
97.668 |
0.42 |
| pilU | Vibrio cholerae strain A1552 |
40.896 |
97.668 |
0.399 |
| pilU | Acinetobacter baylyi ADP1 |
39.706 |
99.125 |
0.394 |