Detailed information NTG0408587

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: GPY16_RS03160
• Genome accession: NZ_CP046832
• Coordinates: 647861..648910 (+)
• Length: 349 a.a.
• NCBI ID: WP_038941440.1
• Uniprot ID: A0A087IIA3
• Organism: Vibrio vulnificus strain 06-2410
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 642861..653910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY16_RS03145	rpoS	643512..644504 (+)	993	WP_045589572.1	RNA polymerase sigma factor RpoS	Regulator
GPY16_RS03150	mutS	644580..647141 (-)	2562	WP_103195753.1	DNA mismatch repair protein MutS	-
GPY16_RS03155	pncC	647225..647728 (+)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
GPY16_RS03160	recA	647861..648910 (+)	1050	WP_038941440.1	recombinase RecA	Machinery gene
GPY16_RS03165	recX	649020..649481 (+)	462	WP_038964353.1	recombination regulator RecX	-
GPY16_RS03170	alaS	649662..652244 (+)	2583	WP_045608633.1	alanine--tRNA ligase	-
GPY16_RS03175	-	652441..653628 (+)	1188	WP_080526800.1	aspartate kinase	-

Sequence

Protein

• Length: 349 a.a.
• Molecular weight: 37710.27 Da
• Isoelectric Point: 4.8857

>NTDB_id=408587 GPY16_RS03160 WP_038941440.1 647861..648910(+) (recA) [Vibrio vulnificus strain 06-2410]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGKANACKYLKENVDVAKVLDT
KLRELLLSSANINDESAELVEEMPEQEEF

Nucleotide

• Length: 1050 bp

>NTDB_id=408587 GPY16_RS03160 WP_038941440.1 647861..648910(+) (recA) [Vibrio vulnificus strain 06-2410]
ATGGACGAGAACAAACAGAAGGCACTGGCCGCCGCACTAGGTCAAATTGAAAAGCAGTTCGGTAAAGGTTCAATCATGCG
CCTAGGTGACAACCGTGCGATGGATGTTGAAACCATCTCGACAGGTTCACTATCTCTGGATATTGCGCTGGGTGCTGGTG
GCTTACCAATGGGCCGTATCGTTGAAATTTTTGGTCCAGAATCTTCAGGTAAAACCACGTTGACCCTTGAGCTGATCGCT
GCGGCTCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCTGAGCACGCGTTAGATCCTGTGTATGCGAAGAAACTTGG
CGTTAATATCGACCAATTGTTGGTATCTCAGCCTGATACTGGTGAACAAGCATTGGAAATCTGTGATGCTCTTGCTCGCT
CAGGTGCGGTTGACGTTATTGTTGTCGACTCTGTGGCCGCATTGACACCAAAGGCAGAAATCGAAGGTGAGATGGGCGAT
TCGCACATGGGTCTTCAAGCTCGTATGCTCTCTCAAGCGATGCGTAAGTTAACGGGGAACCTAAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAAACCACAACAGGTGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTCTTGATATTCGCCGTACTGGTGCGATCAAAGAAGGCGATGAGGTAGTGGGTAATGAA
ACGCGTATCAAAGTGGTGAAGAATAAGATCGCTGCGCCGTTTAAAGAAGCCAACACTCAAATTATGTACGGCCAGGGCTT
TAACCGTGAAGGCGAACTGATTGACCTAGGCGTGAAATGTAAGCTGATTGAAAAATCAGGTGCTTGGTATAGCTATAACG
GCGACAAAATTGGCCAAGGTAAAGCGAACGCATGTAAGTACCTGAAAGAAAACGTAGATGTAGCAAAAGTACTGGATACA
AAATTGCGTGAATTGTTGCTTTCTTCAGCAAACATCAACGATGAATCGGCAGAGTTAGTCGAAGAAATGCCAGAGCAAGA
AGAGTTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A087IIA3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	95.482	95.129	0.908
recA	Vibrio cholerae O1 biovar El Tor strain E7946	95.482	95.129	0.908
recA	Pseudomonas stutzeri DSM 10701	75	95.129	0.713
recA	Glaesserella parasuis strain SC1401	69.492	100	0.705
recA	Acinetobacter baylyi ADP1	70.145	98.854	0.693
recA	Acinetobacter baumannii D1279779	72.948	94.269	0.688
recA	Neisseria gonorrhoeae MS11	69.018	93.41	0.645
recA	Neisseria gonorrhoeae MS11	69.018	93.41	0.645
recA	Neisseria gonorrhoeae strain FA1090	69.018	93.41	0.645
recA	Ralstonia pseudosolanacearum GMI1000	71.061	89.112	0.633
recA	Helicobacter pylori strain NCTC11637	59.884	98.567	0.59
recA	Helicobacter pylori 26695	59.593	98.567	0.587
recA	Streptococcus pneumoniae Rx1	58.571	100	0.587
recA	Streptococcus pneumoniae R6	58.571	100	0.587
recA	Streptococcus pneumoniae D39	58.571	100	0.587
recA	Streptococcus pneumoniae TIGR4	58.571	100	0.587
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.241	90.544	0.582
recA	Bacillus subtilis subsp. subtilis str. 168	63.24	91.977	0.582
recA	Streptococcus mitis SK321	61.92	92.55	0.573
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.423	94.842	0.573
recA	Lactococcus lactis subsp. cremoris KW2	61.61	92.55	0.57
recA	Streptococcus mitis NCTC 12261	61.61	92.55	0.57
recA	Latilactobacillus sakei subsp. sakei 23K	61.682	91.977	0.567
recA	Streptococcus pyogenes NZ131	60.615	93.123	0.564
recA	Streptococcus mutans UA159	60.615	93.123	0.564
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.258	88.825	0.553