Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY34_RS16080 Genome accession   NZ_CP046778
Coordinates   1522363..1523088 (+) Length   241 a.a.
NCBI ID   WP_005459005.1    Uniprot ID   Q87TC3
Organism   Vibrio parahaemolyticus strain 2014V-1125     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1517363..1528088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY34_RS16065 - 1518467..1520788 (+) 2322 WP_005496736.1 Tex family protein -
  GPY34_RS16070 - 1520923..1521387 (-) 465 WP_005459035.1 hypothetical protein -
  GPY34_RS16075 bioH 1521511..1522278 (-) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY34_RS16080 comF 1522363..1523088 (+) 726 WP_005459005.1 amidophosphoribosyltransferase Machinery gene
  GPY34_RS16085 nfuA 1523186..1523770 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY34_RS16090 nudE 1523991..1524560 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GPY34_RS16095 cysQ 1524602..1525429 (+) 828 WP_005496732.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY34_RS16100 - 1525715..1526476 (-) 762 WP_005496730.1 type II secretion system protein N -
  GPY34_RS16105 - 1526478..1526969 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27770.91 Da        Isoelectric Point: 8.9991

>NTDB_id=407552 GPY34_RS16080 WP_005459005.1 1522363..1523088(+) (comF) [Vibrio parahaemolyticus strain 2014V-1125]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407552 GPY34_RS16080 WP_005459005.1 1522363..1523088(+) (comF) [Vibrio parahaemolyticus strain 2014V-1125]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCACTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCACGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87TC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment