Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SPYALAB49_RS07130 Genome accession   NC_017596
Coordinates   1403803..1404837 (-) Length   344 a.a.
NCBI ID   WP_002994331.1    Uniprot ID   -
Organism   Streptococcus pyogenes Alab49     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1398803..1409837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYALAB49_RS07095 (SPYALAB49_001456) nusA 1398861..1400018 (-) 1158 WP_002988817.1 transcription termination factor NusA -
  SPYALAB49_RS07100 (SPYALAB49_001457) rimP 1400193..1400729 (-) 537 WP_014635653.1 ribosome maturation factor RimP -
  SPYALAB49_RS07110 (SPYALAB49_001458) - 1400917..1402050 (-) 1134 WP_000564846.1 ISAs1-like element IS1548 family transposase -
  SPYALAB49_RS07120 (SPYALAB49_001460) trmB 1402313..1402948 (-) 636 WP_011184863.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SPYALAB49_RS07125 (SPYALAB49_001461) ccrZ 1402948..1403739 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  SPYALAB49_RS07130 (SPYALAB49_001462) pptB 1403803..1404837 (-) 1035 WP_002994331.1 ABC transporter permease Regulator
  SPYALAB49_RS07135 (SPYALAB49_001463) pptA 1404840..1405565 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  SPYALAB49_RS07140 (SPYALAB49_001464) - 1405637..1406056 (+) 420 WP_002983376.1 HIT family protein -
  SPYALAB49_RS07145 (SPYALAB49_001465) - 1406053..1406409 (+) 357 WP_002988657.1 hypothetical protein -
  SPYALAB49_RS07150 (SPYALAB49_001466) - 1406520..1407803 (-) 1284 WP_002994335.1 LCP family protein -
  SPYALAB49_RS07155 (SPYALAB49_001467) - 1407812..1408336 (-) 525 WP_002994338.1 GNAT family N-acetyltransferase -
  SPYALAB49_RS07160 (SPYALAB49_001468) tsaE 1408311..1408772 (-) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40242.46 Da        Isoelectric Point: 10.3713

>NTDB_id=40425 SPYALAB49_RS07130 WP_002994331.1 1403803..1404837(-) (pptB) [Streptococcus pyogenes Alab49]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=40425 SPYALAB49_RS07130 WP_002994331.1 1403803..1404837(-) (pptB) [Streptococcus pyogenes Alab49]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment