Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | F7R28_RS04495 | Genome accession | NZ_CP046023 |
| Coordinates | 958646..959689 (-) | Length | 347 a.a. |
| NCBI ID | WP_122954397.1 | Uniprot ID | A0A5Q3HBG9 |
| Organism | Polaromonas sp. Pch-P | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 953646..964689
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7R28_RS04470 (F7R28_04515) | - | 954419..954886 (+) | 468 | WP_122954402.1 | YraN family protein | - |
| F7R28_RS04475 (F7R28_04520) | - | 955122..955721 (+) | 600 | WP_122954401.1 | phosphoheptose isomerase | - |
| F7R28_RS04480 (F7R28_04525) | - | 955718..956377 (+) | 660 | WP_122954400.1 | BON domain-containing protein | - |
| F7R28_RS04485 (F7R28_04530) | - | 956453..957367 (-) | 915 | WP_122954399.1 | NAD(P)-dependent oxidoreductase | - |
| F7R28_RS04490 (F7R28_04535) | pilU | 957456..958592 (-) | 1137 | WP_122954398.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| F7R28_RS04495 (F7R28_04540) | pilT | 958646..959689 (-) | 1044 | WP_122954397.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| F7R28_RS04500 (F7R28_04545) | - | 959739..960440 (+) | 702 | WP_122954396.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| F7R28_RS04505 (F7R28_04550) | - | 960560..961108 (-) | 549 | WP_122954395.1 | DUF3617 domain-containing protein | - |
| F7R28_RS04510 (F7R28_04555) | - | 961197..961676 (-) | 480 | WP_092130297.1 | Lrp/AsnC ligand binding domain-containing protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38180.90 Da Isoelectric Point: 6.8355
>NTDB_id=400260 F7R28_RS04495 WP_122954397.1 958646..959689(-) (pilT) [Polaromonas sp. Pch-P]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINIDPLDHKQVHSMVYDIMNDTQRKTYEEFLEVDFSFEIDGLAR
FRVNAFNQNRGAGAVLRTIPSKILTLEQLNAPKIFGDLAMKPRGMVLVTGPTGSGKSTTLAAMVNFLNENEYGHILTVED
PIEFVHESKKCLINQREVGPHTLSFNAALKSALREDPDAILVGEMRDLETIRLAMSAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMIRSMLSESLQAVISQTLCKTKDGAGRVAAHEIMLGTSAIRNLIREAKVAQMYSSIQTGNSVGMQTLDQN
LTELVKRNVISAAEARGKAKIPENFPG
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINIDPLDHKQVHSMVYDIMNDTQRKTYEEFLEVDFSFEIDGLAR
FRVNAFNQNRGAGAVLRTIPSKILTLEQLNAPKIFGDLAMKPRGMVLVTGPTGSGKSTTLAAMVNFLNENEYGHILTVED
PIEFVHESKKCLINQREVGPHTLSFNAALKSALREDPDAILVGEMRDLETIRLAMSAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMIRSMLSESLQAVISQTLCKTKDGAGRVAAHEIMLGTSAIRNLIREAKVAQMYSSIQTGNSVGMQTLDQN
LTELVKRNVISAAEARGKAKIPENFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=400260 F7R28_RS04495 WP_122954397.1 958646..959689(-) (pilT) [Polaromonas sp. Pch-P]
ATGGATATCACGCAGCTGCTGGCTTTTAGCGTCAAGAACAAGGCGTCTGACTTGCATTTGTCGGCAGGCTTGCCCCCCAT
GATCCGGGTCCACGGCGATGTGCGGCGCATCAACATCGACCCGCTGGACCACAAGCAGGTGCATTCCATGGTGTACGACA
TCATGAACGACACCCAGCGCAAGACGTATGAAGAATTCCTGGAAGTCGACTTTTCCTTTGAGATCGACGGGCTGGCCCGC
TTTCGCGTCAATGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGCTGCGGACCATTCCGTCCAAGATCCTGACGCTGGA
GCAGCTCAACGCCCCCAAGATTTTTGGCGACCTGGCCATGAAACCGCGCGGCATGGTGCTGGTGACCGGGCCTACCGGCT
CGGGCAAGTCCACCACGCTGGCGGCCATGGTCAACTTTTTGAACGAAAACGAGTACGGCCACATCCTCACGGTGGAAGAC
CCGATCGAGTTCGTACACGAATCCAAAAAATGCCTGATCAACCAGCGTGAAGTCGGCCCGCACACGCTGAGCTTTAACGC
CGCGCTGAAATCCGCGCTTCGCGAAGATCCGGACGCCATCCTGGTGGGCGAAATGCGCGACCTGGAAACGATTCGCCTGG
CCATGTCGGCCGCTGAAACCGGCCACCTTGTGTTCGGCACGCTGCACACCTCCAGCGCCGCCAAAACCATCGACCGGATC
ATCGACGTGTTCCCGGCCGAAGAAAAGGAAATGATCCGCTCCATGCTGTCGGAGTCTCTACAGGCCGTGATCTCGCAGAC
GCTGTGCAAAACCAAGGACGGCGCAGGCCGCGTGGCGGCGCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTGA
TCCGCGAAGCCAAGGTTGCGCAGATGTACTCGTCCATCCAGACCGGCAACAGCGTGGGCATGCAGACGCTGGACCAGAAT
TTGACCGAGCTGGTCAAACGCAATGTCATATCGGCCGCCGAAGCGCGCGGCAAAGCCAAAATCCCCGAGAACTTCCCAGG
CTAA
ATGGATATCACGCAGCTGCTGGCTTTTAGCGTCAAGAACAAGGCGTCTGACTTGCATTTGTCGGCAGGCTTGCCCCCCAT
GATCCGGGTCCACGGCGATGTGCGGCGCATCAACATCGACCCGCTGGACCACAAGCAGGTGCATTCCATGGTGTACGACA
TCATGAACGACACCCAGCGCAAGACGTATGAAGAATTCCTGGAAGTCGACTTTTCCTTTGAGATCGACGGGCTGGCCCGC
TTTCGCGTCAATGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGCTGCGGACCATTCCGTCCAAGATCCTGACGCTGGA
GCAGCTCAACGCCCCCAAGATTTTTGGCGACCTGGCCATGAAACCGCGCGGCATGGTGCTGGTGACCGGGCCTACCGGCT
CGGGCAAGTCCACCACGCTGGCGGCCATGGTCAACTTTTTGAACGAAAACGAGTACGGCCACATCCTCACGGTGGAAGAC
CCGATCGAGTTCGTACACGAATCCAAAAAATGCCTGATCAACCAGCGTGAAGTCGGCCCGCACACGCTGAGCTTTAACGC
CGCGCTGAAATCCGCGCTTCGCGAAGATCCGGACGCCATCCTGGTGGGCGAAATGCGCGACCTGGAAACGATTCGCCTGG
CCATGTCGGCCGCTGAAACCGGCCACCTTGTGTTCGGCACGCTGCACACCTCCAGCGCCGCCAAAACCATCGACCGGATC
ATCGACGTGTTCCCGGCCGAAGAAAAGGAAATGATCCGCTCCATGCTGTCGGAGTCTCTACAGGCCGTGATCTCGCAGAC
GCTGTGCAAAACCAAGGACGGCGCAGGCCGCGTGGCGGCGCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTGA
TCCGCGAAGCCAAGGTTGCGCAGATGTACTCGTCCATCCAGACCGGCAACAGCGTGGGCATGCAGACGCTGGACCAGAAT
TTGACCGAGCTGGTCAAACGCAATGTCATATCGGCCGCCGAAGCGCGCGGCAAAGCCAAAATCCCCGAGAACTTCCCAGG
CTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
76.522 |
99.424 |
0.761 |
| pilT | Acinetobacter nosocomialis M2 |
76.232 |
99.424 |
0.758 |
| pilT | Acinetobacter baumannii D1279779 |
76.232 |
99.424 |
0.758 |
| pilT | Acinetobacter baumannii strain A118 |
76.232 |
99.424 |
0.758 |
| pilT | Pseudomonas stutzeri DSM 10701 |
75.652 |
99.424 |
0.752 |
| pilT | Acinetobacter baylyi ADP1 |
74.783 |
99.424 |
0.744 |
| pilT | Legionella pneumophila strain Lp02 |
73.746 |
97.695 |
0.72 |
| pilT | Legionella pneumophila strain ERS1305867 |
73.746 |
97.695 |
0.72 |
| pilT | Neisseria gonorrhoeae MS11 |
66.957 |
99.424 |
0.666 |
| pilT | Neisseria meningitidis 8013 |
66.957 |
99.424 |
0.666 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
66.569 |
98.271 |
0.654 |
| pilT | Vibrio cholerae strain A1552 |
66.569 |
98.271 |
0.654 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.435 |
99.424 |
0.501 |
| pilU | Vibrio cholerae strain A1552 |
42.687 |
96.542 |
0.412 |
| pilU | Acinetobacter baylyi ADP1 |
41.329 |
99.712 |
0.412 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.791 |
96.542 |
0.403 |