Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GII79_RS13235 Genome accession   NZ_CP045823
Coordinates   2543948..2544244 (-) Length   98 a.a.
NCBI ID   WP_029726719.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2538948..2549244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII79_RS13190 (GII79_13190) tasA 2539355..2540140 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  GII79_RS13195 (GII79_13195) sipW 2540204..2540776 (-) 573 WP_072692741.1 signal peptidase I SipW -
  GII79_RS13200 (GII79_13200) tapA 2540760..2541521 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  GII79_RS13205 (GII79_13205) yqzG 2541793..2542119 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GII79_RS13210 (GII79_13210) spoIITA 2542161..2542340 (-) 180 WP_029726723.1 YqzE family protein -
  GII79_RS13215 (GII79_13215) comGG 2542412..2542786 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  GII79_RS13220 (GII79_13220) comGF 2542787..2543170 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  GII79_RS13225 (GII79_13225) comGE 2543196..2543543 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  GII79_RS13230 (GII79_13230) comGD 2543527..2543958 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  GII79_RS13235 (GII79_13235) comGC 2543948..2544244 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  GII79_RS13240 (GII79_13240) comGB 2544258..2545295 (-) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  GII79_RS13245 (GII79_13245) comGA 2545282..2546352 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  GII79_RS13250 (GII79_13250) - 2546565..2546762 (-) 198 WP_029726717.1 hypothetical protein -
  GII79_RS13255 (GII79_13255) corA 2546764..2547717 (-) 954 WP_004399136.1 magnesium transporter CorA -
  GII79_RS13260 (GII79_13260) yqhB 2547860..2549188 (+) 1329 WP_029726716.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10835.67 Da        Isoelectric Point: 6.2112

>NTDB_id=398151 GII79_RS13235 WP_029726719.1 2543948..2544244(-) (comGC) [Bacillus subtilis strain MB8_B1]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKNDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=398151 GII79_RS13235 WP_029726719.1 2543948..2544244(-) (comGC) [Bacillus subtilis strain MB8_B1]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAACGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

98.98

100

0.99
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment