Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GII80_RS18990 Genome accession   NZ_CP045821
Coordinates   3625423..3626112 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain MB8_B7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620423..3631112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII80_RS18955 (GII80_18955) flgN 3620603..3621085 (-) 483 WP_003227999.1 flagellar protein FlgN -
  GII80_RS18960 (GII80_18960) flgM 3621101..3621367 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  GII80_RS18965 (GII80_18965) yvyF 3621448..3621867 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GII80_RS18970 (GII80_18970) comFC 3621941..3622663 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  GII80_RS18975 (GII80_18975) comFB 3622627..3622923 (-) 297 WP_003227989.1 late competence protein ComFB -
  GII80_RS18980 (GII80_18980) comFA 3622983..3624374 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  GII80_RS18985 (GII80_18985) fakBA 3624480..3625325 (-) 846 WP_003244125.1 DegV family protein -
  GII80_RS18990 (GII80_18990) degU 3625423..3626112 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GII80_RS18995 (GII80_18995) degS 3626195..3627352 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GII80_RS19000 (GII80_19000) yvyE 3627569..3628222 (+) 654 WP_003227979.1 YigZ family protein -
  GII80_RS19005 (GII80_19005) tagV 3628222..3629397 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GII80_RS19010 (GII80_19010) tagO 3629470..3630546 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=398095 GII80_RS18990 WP_003219701.1 3625423..3626112(-) (degU) [Bacillus subtilis strain MB8_B7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=398095 GII80_RS18990 WP_003219701.1 3625423..3626112(-) (degU) [Bacillus subtilis strain MB8_B7]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment