Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GA645_RS02025 | Genome accession | NZ_CP045118 |
| Coordinates | 425044..426078 (+) | Length | 344 a.a. |
| NCBI ID | WP_152219496.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. SCB32 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 420044..431078
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GA645_RS02000 | - | 421178..421468 (-) | 291 | WP_152219485.1 | DUF167 domain-containing protein | - |
| GA645_RS02005 | - | 421475..422068 (-) | 594 | WP_152219487.1 | YggT family protein | - |
| GA645_RS02010 | - | 422211..423284 (-) | 1074 | WP_152219489.1 | hypothetical protein | - |
| GA645_RS02015 | proC | 423431..424264 (-) | 834 | WP_152219491.1 | pyrroline-5-carboxylate reductase | - |
| GA645_RS02020 | - | 424282..424971 (-) | 690 | WP_152219494.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| GA645_RS02025 | pilT | 425044..426078 (+) | 1035 | WP_152219496.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GA645_RS02030 | pilU | 426326..427471 (+) | 1146 | WP_152219498.1 | type IV pilus ATPase PilU | Machinery gene |
| GA645_RS02035 | - | 427550..427954 (+) | 405 | WP_152219500.1 | TM2 domain-containing protein | - |
| GA645_RS02040 | - | 428273..429646 (+) | 1374 | WP_152219502.1 | cystathionine beta-synthase | - |
| GA645_RS02045 | - | 429643..430812 (+) | 1170 | WP_152219504.1 | cystathionine gamma-synthase | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 37942.81 Da Isoelectric Point: 6.7753
>NTDB_id=392020 GA645_RS02025 WP_152219496.1 425044..426078(+) (pilT) [Pseudomonas sp. SCB32]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGEVFKRITDVPRGLVLVTGPTGSGKSTSLAAMLDYLNNTKYSHILTVED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQSVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSSIQTGGAIGMQTLDMCL
KGLVAKGLVTREAAKEKAKIPENF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGEVFKRITDVPRGLVLVTGPTGSGKSTSLAAMLDYLNNTKYSHILTVED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQSVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSSIQTGGAIGMQTLDMCL
KGLVAKGLVTREAAKEKAKIPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=392020 GA645_RS02025 WP_152219496.1 425044..426078(+) (pilT) [Pseudomonas sp. SCB32]
ATGGATATTACCGAGTTGCTCGCCTTCAGCGCCAAGCAAGGTGCTTCGGACCTGCACCTCTCGGCCGGTCTGCCGCCGAT
GATCCGCGTCGACGGGGACGTTCGCCGGATCAACCTGCCGCCACTCGAGCACAAGCAGGTCCATGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGACTTTGAAGAGTTCCTCGAGACCGACTTCTCCTTCGAAGTCCCCGGGGTCGCCCGT
TTCCGGGTCAATGCCTTCAACCAGAACCGTGGCGCCGGCGCCGTGTTCCGTACCATTCCCTCCAAGGTACTCACGATGGA
GGACCTGGGCATGGGAGAAGTGTTCAAGCGTATTACGGACGTGCCGCGCGGCCTCGTGCTGGTGACCGGCCCGACCGGCT
CGGGCAAGTCCACCTCGCTGGCGGCGATGCTCGATTACCTGAACAACACCAAGTACAGCCACATCCTCACCGTCGAAGAC
CCGATCGAATTCGTCCACGAGTCGAAGAAGTGCCTGGTCAACCAGCGCGAGGTGCACCGCGATACCCTCGGCTTCAACGA
GGCGCTGCGCTCGGCCCTGCGTGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGCGACCTGGAGACCATTCGCCTGG
CGCTGACCGCCGCGGAAACCGGTCACCTGGTCTTCGGTACCCTGCACACCACCTCCGCGGCCAAGACCATCGACCGTATC
GTCGACGTGTTCCCCGCCGAGGAAAAGTCCATGGTTCGCTCCATGCTTTCCGAATCCTTGCAGTCGGTGATCTCCCAGAC
CCTGCTGAAGAAGATCGGCGGCGGTCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCGGCGATCCGTAACCTGATCC
GTGAAGACAAGGTCGCGCAGATGTACTCGTCGATCCAGACCGGCGGTGCGATCGGCATGCAGACCCTGGACATGTGCCTG
AAGGGTCTGGTCGCCAAGGGTCTGGTGACCCGCGAGGCGGCCAAGGAAAAGGCCAAGATTCCGGAAAACTTCTAA
ATGGATATTACCGAGTTGCTCGCCTTCAGCGCCAAGCAAGGTGCTTCGGACCTGCACCTCTCGGCCGGTCTGCCGCCGAT
GATCCGCGTCGACGGGGACGTTCGCCGGATCAACCTGCCGCCACTCGAGCACAAGCAGGTCCATGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGACTTTGAAGAGTTCCTCGAGACCGACTTCTCCTTCGAAGTCCCCGGGGTCGCCCGT
TTCCGGGTCAATGCCTTCAACCAGAACCGTGGCGCCGGCGCCGTGTTCCGTACCATTCCCTCCAAGGTACTCACGATGGA
GGACCTGGGCATGGGAGAAGTGTTCAAGCGTATTACGGACGTGCCGCGCGGCCTCGTGCTGGTGACCGGCCCGACCGGCT
CGGGCAAGTCCACCTCGCTGGCGGCGATGCTCGATTACCTGAACAACACCAAGTACAGCCACATCCTCACCGTCGAAGAC
CCGATCGAATTCGTCCACGAGTCGAAGAAGTGCCTGGTCAACCAGCGCGAGGTGCACCGCGATACCCTCGGCTTCAACGA
GGCGCTGCGCTCGGCCCTGCGTGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGCGACCTGGAGACCATTCGCCTGG
CGCTGACCGCCGCGGAAACCGGTCACCTGGTCTTCGGTACCCTGCACACCACCTCCGCGGCCAAGACCATCGACCGTATC
GTCGACGTGTTCCCCGCCGAGGAAAAGTCCATGGTTCGCTCCATGCTTTCCGAATCCTTGCAGTCGGTGATCTCCCAGAC
CCTGCTGAAGAAGATCGGCGGCGGTCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCGGCGATCCGTAACCTGATCC
GTGAAGACAAGGTCGCGCAGATGTACTCGTCGATCCAGACCGGCGGTGCGATCGGCATGCAGACCCTGGACATGTGCCTG
AAGGGTCTGGTCGCCAAGGGTCTGGTGACCCGCGAGGCGGCCAAGGAAAAGGCCAAGATTCCGGAAAACTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
95.058 |
100 |
0.951 |
| pilT | Pseudomonas stutzeri DSM 10701 |
93.605 |
100 |
0.936 |
| pilT | Acinetobacter baumannii D1279779 |
84.012 |
100 |
0.84 |
| pilT | Acinetobacter baumannii strain A118 |
84.012 |
100 |
0.84 |
| pilT | Acinetobacter nosocomialis M2 |
83.721 |
100 |
0.837 |
| pilT | Acinetobacter baylyi ADP1 |
82.267 |
100 |
0.823 |
| pilT | Legionella pneumophila strain Lp02 |
76.036 |
98.256 |
0.747 |
| pilT | Legionella pneumophila strain ERS1305867 |
76.036 |
98.256 |
0.747 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
67.647 |
98.837 |
0.669 |
| pilT | Vibrio cholerae strain A1552 |
67.647 |
98.837 |
0.669 |
| pilT | Neisseria gonorrhoeae MS11 |
66.377 |
100 |
0.666 |
| pilT | Neisseria meningitidis 8013 |
66.377 |
100 |
0.666 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.464 |
100 |
0.526 |
| pilU | Vibrio cholerae strain A1552 |
41.003 |
98.547 |
0.404 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.194 |
97.384 |
0.401 |
| pilU | Acinetobacter baylyi ADP1 |
38.728 |
100 |
0.39 |