Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   FSC11_RS11290 Genome accession   NZ_CP044483
Coordinates   2359997..2361118 (+) Length   373 a.a.
NCBI ID   WP_163166954.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2354997..2366118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS11275 (FSC11_11290) - 2356965..2358071 (+) 1107 WP_163166952.1 acyltransferase family protein -
  FSC11_RS11280 (FSC11_11295) - 2358118..2358804 (-) 687 WP_163167788.1 YggS family pyridoxal phosphate-dependent enzyme -
  FSC11_RS11285 (FSC11_11300) pilT 2358928..2359965 (+) 1038 WP_004811122.1 type IV pilus twitching motility protein PilT Machinery gene
  FSC11_RS11290 (FSC11_11305) pilU 2359997..2361118 (+) 1122 WP_163166954.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  FSC11_RS11295 (FSC11_11310) fur 2361197..2361634 (-) 438 WP_004811125.1 ferric iron uptake transcriptional regulator -
  FSC11_RS11300 (FSC11_11315) - 2361747..2362145 (+) 399 WP_004811126.1 outer membrane protein assembly factor BamE -
  FSC11_RS11305 (FSC11_11320) - 2362255..2362581 (-) 327 WP_004811128.1 RnfH family protein -
  FSC11_RS11310 (FSC11_11325) - 2362581..2363660 (-) 1080 WP_163166956.1 hypothetical protein -
  FSC11_RS11315 (FSC11_11330) - 2363800..2364255 (-) 456 WP_004893331.1 bacteriohemerythrin -
  FSC11_RS11320 (FSC11_11335) - 2364533..2365381 (-) 849 WP_163166958.1 class II glutamine amidotransferase -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 41432.60 Da        Isoelectric Point: 6.7805

>NTDB_id=390260 FSC11_RS11290 WP_163166954.1 2359997..2361118(+) (pilU) [Acinetobacter schindleri strain HZE30-1]
MDFNGLLDYMVAQKASDLFITADVEPSIKVNGSIVPIGSVKLPGPAVGQILHSIMTEKQRKEFADTHECNFAITNPSKSA
RFRVSAFQQRDQPGMVLRRIETVIPTMDDLKLPPILKELAMTKRGIIIFVGATGTGKSTSLASLIGYRNENSKGHIITIE
DPIEFVHQHKGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSRETMDYAIAFAETGHLVFATLHANNANQAIDR
IIHFFEADRHNQLFMDLSLNLKAMVAQQLIPTIDGTGRRAAIEILINSPLVSDLIRKGDVHEIKDLMKRSRELGMQTFDQ
ALYDLYKAKQISYKDALKHADSPNDLRLQIKLSEEGGAHLMNAGSNITFDGQS

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=390260 FSC11_RS11290 WP_163166954.1 2359997..2361118(+) (pilU) [Acinetobacter schindleri strain HZE30-1]
ATGGATTTTAACGGCTTACTCGACTATATGGTGGCGCAAAAGGCATCGGATCTGTTCATTACTGCAGATGTCGAACCTTC
AATTAAAGTGAATGGCTCAATTGTGCCGATTGGATCAGTCAAATTACCTGGACCAGCAGTAGGCCAGATTCTGCATTCAA
TTATGACGGAAAAACAGCGCAAGGAATTTGCCGATACACATGAGTGTAACTTTGCGATTACCAATCCCAGCAAATCAGCA
CGTTTCCGTGTCAGTGCATTTCAGCAGCGTGATCAGCCGGGTATGGTTCTGCGTCGTATTGAAACCGTCATTCCCACTAT
GGATGATTTAAAGTTACCGCCAATTCTGAAAGAACTGGCGATGACCAAGCGCGGTATTATCATCTTCGTGGGTGCAACAG
GTACCGGTAAATCGACTTCTCTTGCCTCTTTGATTGGTTATCGTAATGAAAATTCCAAAGGTCATATCATTACCATCGAA
GACCCGATCGAATTTGTGCACCAGCATAAGGGTTGTATCATCACTCAGCGTGAAGTCGGGATCGACACAGATTCATTTGA
AATCGCCCTGAAAAATACCCTGCGTCAGGCACCAGACGTAATTCTGATCGGTGAGATCCGTTCCCGTGAAACCATGGACT
ATGCTATTGCCTTTGCGGAAACCGGTCACCTGGTATTTGCGACCCTACACGCCAATAACGCCAACCAGGCCATTGACCGG
ATTATTCACTTCTTTGAAGCAGACCGTCATAACCAGCTGTTTATGGACTTGTCTTTAAACCTCAAAGCGATGGTGGCACA
GCAGCTAATCCCAACCATTGATGGTACAGGCCGGCGTGCCGCAATTGAGATCCTGATCAACTCACCTTTAGTTTCAGATC
TGATCCGTAAAGGTGATGTGCATGAAATTAAAGACTTGATGAAGCGTTCACGTGAACTTGGAATGCAGACTTTTGACCAG
GCACTGTATGACCTGTATAAGGCCAAACAGATCAGCTATAAGGATGCGTTGAAACATGCTGACTCTCCAAACGATCTGCG
TCTGCAAATCAAGTTATCCGAAGAAGGTGGTGCACATCTGATGAATGCCGGCAGCAATATTACCTTTGATGGACAATCTT
AA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Acinetobacter baylyi ADP1

73.81

100

0.748
  pilU Pseudomonas stutzeri DSM 10701

68.464

99.464

0.681
  pilU Vibrio cholerae strain A1552

56.98

94.102

0.536
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.047

97.319

0.399
  pilT Legionella pneumophila strain Lp02

43.75

90.08

0.394
  pilT Legionella pneumophila strain ERS1305867

43.75

90.08

0.394
  pilT Acinetobacter nosocomialis M2

42.274

91.957

0.389
  pilT Acinetobacter baumannii D1279779

42.274

91.957

0.389
  pilT Acinetobacter baumannii strain A118

42.274

91.957

0.389
  pilT Pseudomonas aeruginosa PAK

40.751

92.761

0.378
  pilT Neisseria meningitidis 8013

40.462

92.761

0.375
  pilT Neisseria gonorrhoeae MS11

40.462

92.761

0.375
  pilT Acinetobacter baylyi ADP1

40.233

91.957

0.37
  pilT Pseudomonas stutzeri DSM 10701

39.884

92.761

0.37
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

39.031

94.102

0.367
  pilT Vibrio cholerae strain A1552

39.031

94.102

0.367

Multiple sequence alignment