Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   HHJ29_RS03985 Genome accession   NZ_CP051725
Coordinates   830870..832039 (-) Length   389 a.a.
NCBI ID   WP_001161856.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-112     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 825870..837039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ29_RS03970 (HHJ29_03970) - 826531..827576 (-) 1046 Protein_789 IS481 family transposase -
  HHJ29_RS25385 (HHJ29_03975) kfiC 827737..829310 (+) 1574 Protein_790 K5 polysaccharide biosynthesis glycosyltransferase KfiC -
  HHJ29_RS03980 (HHJ29_03980) kfiD 829353..830531 (+) 1179 WP_001305084.1 K5 polysaccharide biosynthesis UDP-glucose dehydrogenase KfiD -
  HHJ29_RS03985 (HHJ29_03985) kpsS 830870..832039 (-) 1170 WP_001161856.1 capsular biosynthesis protein Regulator
  HHJ29_RS03990 (HHJ29_03990) - 832074..834101 (-) 2028 WP_000579513.1 capsular polysaccharide biosynthesis protein -
  HHJ29_RS03995 (HHJ29_03995) kdsB 834098..834838 (-) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HHJ29_RS04000 (HHJ29_04000) - 834848..836524 (-) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 46397.64 Da        Isoelectric Point: 10.0934

>NTDB_id=387394 HHJ29_RS03985 WP_001161856.1 830870..832039(-) (kpsS) [Escherichia coli strain SCU-112]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERILYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYY

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=387394 HHJ29_RS03985 WP_001161856.1 830870..832039(-) (kpsS) [Escherichia coli strain SCU-112]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGACACAATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGCCATGCTATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAATCCTTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

100

0.398

Multiple sequence alignment