Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ELI_RS19370 Genome accession   NC_014624
Coordinates   4083608..4085371 (+) Length   587 a.a.
NCBI ID   WP_013382599.1    Uniprot ID   A0AB74F473
Organism   Eubacterium callanderi     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4078608..4090371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELI_RS19350 (ELI_4350) - 4080982..4082148 (-) 1167 WP_013382594.1 hypothetical protein -
  ELI_RS22010 (ELI_4352) - 4082468..4082620 (-) 153 WP_013382596.1 hypothetical protein -
  ELI_RS19360 (ELI_4353) - 4082894..4083376 (+) 483 WP_013382597.1 MarR family winged helix-turn-helix transcriptional regulator -
  ELI_RS19365 (ELI_4354) - 4083369..4083542 (+) 174 WP_013382598.1 cysteine-rich KTR domain-containing protein -
  ELI_RS19370 (ELI_4355) rcrP 4083608..4085371 (+) 1764 WP_013382599.1 ABC transporter ATP-binding protein Regulator
  ELI_RS19375 (ELI_4356) rcrQ 4085364..4087199 (+) 1836 WP_013382600.1 ABC transporter ATP-binding protein Regulator
  ELI_RS19380 (ELI_4358) - 4087387..4089054 (-) 1668 WP_013382602.1 FAD-dependent oxidoreductase -
  ELI_RS19385 (ELI_4359) ahpC 4089071..4089637 (-) 567 WP_013382603.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64116.60 Da        Isoelectric Point: 8.2120

>NTDB_id=38718 ELI_RS19370 WP_013382599.1 4083608..4085371(+) (rcrP) [Eubacterium callanderi]
MIKILKNLTTKEWGLVAIVLVLIVFQVWIDLTLPEFMGKITELVQTPGSGMQAILFAGIRMLLLTLASVAVSVVITGLAA
RIAANLSSRLRAGLFNKVQSFTMQEINNFSISSLITRTTNDITQVQMLMVIGLQILIKSPILALWAIVKIMGKSWQWSAA
TGIAVAILIIVSSIIISLAIPKFKLLQKQTDDLSRVSRENLTGLRVVRAYNAEQYQEDKFEKANSAFTHTNLFSNRLMAA
LMPSVELIMNGLTLSVYWIGAALIASSAVSERVPLFSDMMVFSSYAIQLLMAFMLLGVVLILIPGASVSADRICEVLDTN
PAIQDGIISHTRTATPGEVEFKNVSFKYPNAEDYVLQNISFRASKGETIAFIGSTGCGKSTVINLIPRFYDVTEGGVYVD
GINVKDFTQAALRNKIGYVSQKAILFKGDISSNVSFGSNGNGGVSHEAVTSAISTAQSTDFVEAMEDSYQSYVAPGGTNL
SGGQKQRLSIARAIARKPEILIFDDSFSALDYKTDKLLRGELRHHATDATIIIVAQRIGTIKDADKIIVLDEGRIAGMGT
HRELIKKCDLYKEIAYSQLSKEELENE

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=38718 ELI_RS19370 WP_013382599.1 4083608..4085371(+) (rcrP) [Eubacterium callanderi]
TTGATAAAAATACTAAAAAATCTTACCACAAAAGAGTGGGGGCTGGTTGCCATCGTTCTTGTCCTGATTGTTTTTCAAGT
ATGGATTGATTTAACATTACCGGAATTTATGGGGAAAATCACCGAACTTGTTCAGACGCCCGGCAGCGGAATGCAGGCGA
TTTTATTCGCCGGCATCCGGATGCTGCTGCTCACCCTGGCAAGCGTTGCGGTTTCCGTTGTTATCACCGGGCTCGCCGCG
CGAATCGCAGCCAATCTTTCTTCAAGATTGAGAGCAGGCCTGTTTAATAAGGTACAGTCGTTCACAATGCAGGAAATTAA
TAATTTTTCCATTTCCAGTTTAATTACACGAACGACAAACGACATTACACAGGTTCAAATGCTGATGGTAATCGGGCTGC
AAATCCTGATTAAATCACCAATTTTAGCTCTATGGGCCATTGTAAAAATCATGGGCAAAAGCTGGCAGTGGTCAGCCGCG
ACAGGTATTGCAGTTGCGATACTGATTATTGTATCTTCAATAATCATTTCTCTGGCGATCCCAAAATTCAAACTGCTTCA
GAAGCAGACCGACGATTTGAGCCGTGTTTCAAGAGAAAACCTAACCGGCCTTCGGGTTGTCCGTGCCTACAACGCGGAGC
AGTATCAAGAAGATAAATTTGAAAAAGCCAATTCTGCTTTTACCCATACCAACTTATTTTCCAACCGACTAATGGCCGCA
CTGATGCCTTCAGTTGAGCTGATCATGAATGGTTTAACCTTATCGGTATACTGGATTGGCGCTGCGCTCATTGCATCCTC
CGCTGTGTCGGAAAGGGTTCCCTTGTTTTCAGACATGATGGTATTTTCCTCTTATGCCATTCAACTGCTCATGGCCTTCA
TGCTGCTTGGTGTTGTTTTAATCCTGATTCCCGGCGCCAGCGTATCCGCAGACCGCATTTGCGAAGTCCTAGATACCAAT
CCGGCCATTCAGGATGGAATCATCAGCCATACACGCACCGCTACGCCCGGCGAGGTAGAATTTAAAAACGTTAGCTTTAA
ATATCCAAACGCGGAGGATTATGTTCTGCAAAACATCAGCTTTCGGGCAAGCAAGGGCGAAACCATCGCCTTTATCGGCT
CCACAGGCTGTGGCAAGAGTACGGTTATCAACCTCATTCCAAGGTTTTATGATGTTACAGAAGGCGGCGTTTATGTGGAC
GGCATCAATGTCAAGGATTTTACCCAGGCGGCTTTGCGCAATAAAATCGGGTACGTTTCACAGAAGGCCATTCTTTTTAA
AGGGGATATTTCCTCCAATGTGTCCTTTGGTTCAAACGGAAACGGCGGGGTAAGTCATGAGGCCGTTACCTCTGCCATTT
CAACCGCCCAAAGCACAGACTTTGTGGAAGCCATGGAAGATTCCTATCAAAGCTATGTGGCGCCCGGCGGCACCAATCTT
TCCGGCGGACAAAAGCAGCGGCTTTCCATCGCCCGGGCCATTGCAAGAAAGCCCGAAATTTTGATATTTGACGATAGTTT
CTCAGCCCTTGACTATAAAACCGATAAGTTGCTGCGAGGCGAACTGAGACATCATGCCACAGACGCCACCATTATCATTG
TGGCTCAGCGCATCGGAACTATTAAGGATGCCGATAAAATTATTGTTTTAGATGAAGGCCGGATTGCCGGGATGGGCACA
CACCGCGAATTGATCAAAAAATGCGATTTATACAAAGAAATTGCCTATTCTCAACTCTCAAAGGAGGAACTGGAAAATGA
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.498

100

0.504

Multiple sequence alignment