Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ELI_RS19375 Genome accession   NC_014624
Coordinates   4085364..4087199 (+) Length   611 a.a.
NCBI ID   WP_013382600.1    Uniprot ID   A0AB74F4E3
Organism   Eubacterium callanderi     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4080364..4092199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELI_RS19350 (ELI_4350) - 4080982..4082148 (-) 1167 WP_013382594.1 hypothetical protein -
  ELI_RS22010 (ELI_4352) - 4082468..4082620 (-) 153 WP_013382596.1 hypothetical protein -
  ELI_RS19360 (ELI_4353) - 4082894..4083376 (+) 483 WP_013382597.1 MarR family winged helix-turn-helix transcriptional regulator -
  ELI_RS19365 (ELI_4354) - 4083369..4083542 (+) 174 WP_013382598.1 cysteine-rich KTR domain-containing protein -
  ELI_RS19370 (ELI_4355) rcrP 4083608..4085371 (+) 1764 WP_013382599.1 ABC transporter ATP-binding protein Regulator
  ELI_RS19375 (ELI_4356) rcrQ 4085364..4087199 (+) 1836 WP_013382600.1 ABC transporter ATP-binding protein Regulator
  ELI_RS19380 (ELI_4358) - 4087387..4089054 (-) 1668 WP_013382602.1 FAD-dependent oxidoreductase -
  ELI_RS19385 (ELI_4359) ahpC 4089071..4089637 (-) 567 WP_013382603.1 alkyl hydroperoxide reductase subunit C -
  ELI_RS19390 (ELI_4360) - 4089827..4090795 (-) 969 WP_013382604.1 DMT family transporter -
  ELI_RS19395 (ELI_4361) - 4090893..4091777 (-) 885 WP_013382605.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67734.13 Da        Isoelectric Point: 9.2596

>NTDB_id=38719 ELI_RS19375 WP_013382600.1 4085364..4087199(+) (rcrQ) [Eubacterium callanderi]
MNNAQYNKNQKAENTDLSDFSGMSGSVAKAKDTKKTIKMLLTYSKKYLPGIIIAVIAAVAGTIIALVGPGKLKVLTNLIT
EGIPTIIDMPGIVKIGILLIVLYLTSALLNTLQGWIMATVTQKISQKMRIDISRKINRLPMWFYHKNTTGDILSRITNDV
DSLGQNLNNSLTTLVTSITMLTGSLIMMFITNWTMTLAAIASVVLGFITMMIIMSKSQKHFDNQQKYLGLINGHIEETYT
GHLIVKAYNGEQQMFEPFKGLNKKLNKSTYMAQFLSGLMMPIMTFVDNISYVAVIVVGASLVISGQISFGVIVAFLVYVR
YFTQPLTQIAQLAQGLQMAVASGERVFEFLDAEEMADEKNKKAPLQNVKGHVEFKNVKFSYEGTDKMVINNFSAIAKPGQ
KIAIVGPTGSGKTTLVNLLMRFNEINSGDILIDGVPIRQMTRAQVHSLFCMVLQDTWLFEGTIRENIVYNKQNVSDEDLK
KACALVGLHHFIRTLPNGYDTVLNDKVNLSAGQRQQITIARTMIDNAPMLILDEATSSIDTRTEVMIQNAMDKLMEGRTS
FVIAHRLSTIKNADIILVLKDGDIIESGSHTELIEKNGFYAELYNSQFEVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=38719 ELI_RS19375 WP_013382600.1 4085364..4087199(+) (rcrQ) [Eubacterium callanderi]
ATGAATAATGCGCAATACAATAAAAACCAGAAGGCCGAAAACACGGACCTCTCCGATTTTTCCGGCATGAGCGGATCTGT
TGCAAAAGCAAAAGATACGAAAAAAACAATAAAAATGCTGTTGACTTATTCAAAAAAATACCTGCCGGGTATCATCATTG
CAGTTATAGCCGCTGTTGCAGGGACTATCATTGCCCTGGTAGGCCCTGGTAAACTCAAAGTTTTAACCAATCTGATTACT
GAAGGTATCCCGACCATCATCGATATGCCTGGCATTGTTAAAATTGGGATTCTTTTAATTGTATTGTACTTAACGAGTGC
GCTCTTAAATACCTTACAGGGATGGATCATGGCCACCGTCACCCAGAAGATATCTCAAAAAATGCGAATTGATATCAGTA
GAAAAATCAACCGTCTGCCCATGTGGTTTTATCATAAAAACACCACCGGCGACATTCTTTCCCGCATCACAAACGATGTC
GATTCACTGGGGCAGAATTTAAATAACAGTTTGACCACCCTTGTAACGTCCATCACCATGCTCACGGGCTCTCTCATCAT
GATGTTTATCACAAACTGGACCATGACTCTTGCGGCAATTGCCTCTGTCGTCCTTGGATTTATCACTATGATGATCATTA
TGAGTAAATCTCAAAAACATTTTGACAACCAGCAAAAATATTTGGGGCTTATTAACGGCCATATCGAAGAAACCTACACG
GGCCACCTTATTGTAAAGGCCTATAACGGCGAGCAGCAGATGTTTGAACCCTTCAAAGGCCTAAACAAAAAACTAAATAA
AAGTACCTATATGGCCCAATTTCTTTCTGGCCTGATGATGCCTATCATGACCTTTGTAGACAACATCAGTTATGTTGCTG
TCATCGTTGTCGGTGCGTCTTTAGTGATAAGCGGACAAATCTCTTTTGGCGTGATTGTCGCGTTCTTGGTCTATGTGCGC
TATTTCACCCAGCCCCTCACACAAATCGCCCAATTGGCTCAAGGCTTACAGATGGCGGTTGCCTCTGGTGAACGCGTCTT
TGAATTCTTGGATGCAGAGGAGATGGCTGATGAAAAAAATAAAAAAGCGCCACTGCAGAATGTAAAGGGCCATGTCGAAT
TTAAAAATGTCAAATTCAGCTACGAAGGGACCGATAAAATGGTTATCAATAACTTTTCCGCCATCGCCAAACCCGGACAA
AAAATTGCCATTGTCGGTCCAACCGGATCAGGAAAAACAACCCTTGTCAATTTACTCATGCGTTTTAATGAGATCAACAG
CGGTGATATTTTGATTGACGGCGTTCCAATCCGGCAAATGACAAGAGCTCAGGTGCACTCTCTTTTCTGTATGGTCTTGC
AAGACACCTGGCTTTTTGAAGGCACCATTCGGGAAAACATTGTTTACAACAAGCAAAACGTATCCGACGAAGATCTCAAA
AAGGCCTGTGCGTTGGTGGGCTTGCACCACTTCATCCGTACCCTTCCCAATGGGTATGATACAGTCCTGAACGATAAGGT
TAATCTTTCAGCGGGCCAGCGGCAGCAGATAACCATTGCCCGCACCATGATTGATAACGCACCCATGCTCATTTTAGATG
AAGCGACAAGTTCCATTGACACCCGGACAGAAGTGATGATTCAAAATGCGATGGACAAGCTTATGGAAGGCCGCACCTCC
TTTGTCATCGCCCATCGCCTTTCCACCATCAAAAACGCAGACATCATCCTAGTGCTCAAAGACGGTGATATTATTGAAAG
CGGCAGTCATACCGAATTAATTGAAAAAAACGGTTTTTACGCCGAGCTTTACAACAGCCAGTTTGAAGTCGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(51-326)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.759

94.926

0.501

Multiple sequence alignment