Detailed information NTG0038111

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPSNT_RS00425
• Genome accession: NC_017376
• Coordinates: 89014..90249 (-)
• Length: 411 a.a.
• NCBI ID: WP_000734981.1
• Uniprot ID: -
• Organism: Helicobacter pylori SNT49
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 84014..95249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSNT_RS00385 (HPSNT_00395)	-	84137..85864 (-)	1728	WP_001227391.1	type IV secretory system conjugative DNA transfer family protein	-
HPSNT_RS00390 (HPSNT_00400)	-	85865..86422 (-)	558	WP_001167765.1	hypothetical protein	-
HPSNT_RS00395 (HPSNT_00405)	-	86423..86713 (-)	291	WP_000159825.1	hypothetical protein	-
HPSNT_RS00400 (HPSNT_00410)	-	86710..87165 (-)	456	WP_000795456.1	hypothetical protein	-
HPSNT_RS00405 (HPSNT_00415)	-	87162..88103 (-)	942	WP_000625151.1	CpaF/VirB11 family protein	-
HPSNT_RS00410 (HPSNT_00420)	-	88093..88398 (-)	306	WP_014536654.1	hypothetical protein	-
HPSNT_RS00415 (HPSNT_00425)	-	88395..88658 (-)	264	WP_000564646.1	hypothetical protein	-
HPSNT_RS00420 (HPSNT_00430)	-	88651..88944 (-)	294	WP_000773938.1	hypothetical protein	-
HPSNT_RS00425 (HPSNT_00435)	comB10	89014..90249 (-)	1236	WP_000734981.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSNT_RS00430 (HPSNT_00440)	-	90246..91787 (-)	1542	WP_000714787.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPSNT_RS00435 (HPSNT_00445)	-	91787..92773 (-)	987	WP_000416475.1	type IV secretion system protein	-
HPSNT_RS08510 (HPSNT_00450)	-	92775..92903 (-)	129	WP_001185491.1	hypothetical protein	-
HPSNT_RS00440	-	92903..94839 (-)	1937	Protein_78	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46475.54 Da
• Isoelectric Point: 10.0077

>NTDB_id=38111 HPSNT_RS00425 WP_000734981.1 89014..90249(-) (comB10) [Helicobacter pylori SNT49]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPFFNYSTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=38111 HPSNT_RS00425 WP_000734981.1 89014..90249(-) (comB10) [Helicobacter pylori SNT49]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAGCCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATTCTTCAACTACAGTACCGCTAATGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACATCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACAATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTTAAGGGTTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAACAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGTCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATTCCTAAAAACAATGAAGTATTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	56.827	65.937	0.375