Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPSNT_RS00450 Genome accession   NC_017376
Coordinates   97343..97603 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori SNT49     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 92343..102603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSNT_RS08510 (HPSNT_00450) - 92775..92903 (-) 129 WP_001185491.1 hypothetical protein -
  HPSNT_RS00440 - 92903..94839 (-) 1937 Protein_78 type IA DNA topoisomerase -
  HPSNT_RS00445 (HPSNT_00465) - 94832..97330 (-) 2499 WP_000478392.1 VirB4 family type IV secretion system protein -
  HPSNT_RS00450 (HPSNT_00470) comB3 97343..97603 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  HPSNT_RS00455 (HPSNT_00475) - 97604..97906 (-) 303 WP_000649840.1 TrbC/VirB2 family protein -
  HPSNT_RS00460 (HPSNT_00480) - 97896..99812 (-) 1917 WP_000332143.1 toprim domain-containing protein -
  HPSNT_RS00465 (HPSNT_00485) - 99823..100587 (-) 765 WP_000667730.1 hypothetical protein -
  HPSNT_RS00470 - 100643..100812 (+) 170 Protein_84 SMI1/KNR4 family protein -
  HPSNT_RS00475 (HPSNT_00490) - 100814..101161 (+) 348 WP_000491342.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=38112 HPSNT_RS00450 WP_000602756.1 97343..97603(-) (comB3) [Helicobacter pylori SNT49]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=38112 HPSNT_RS00450 WP_000602756.1 97343..97603(-) (comB3) [Helicobacter pylori SNT49]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTAGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment