Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   FXN58_RS06385 Genome accession   NZ_CP043003
Coordinates   1197148..1197450 (+) Length   100 a.a.
NCBI ID   WP_148324958.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1192148..1202450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS06350 (FXN58_06345) tolA 1192325..1193509 (+) 1185 WP_148324949.1 cell envelope integrity protein TolA -
  FXN58_RS06355 (FXN58_06350) tolB 1193544..1194824 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  FXN58_RS06360 (FXN58_06355) pal 1194839..1195306 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  FXN58_RS06375 (FXN58_06370) comO 1195801..1196481 (+) 681 WP_262404481.1 type II secretion system protein J Machinery gene
  FXN58_RS06380 (FXN58_06375) - 1196478..1197173 (+) 696 WP_148324955.1 DUF2572 family protein -
  FXN58_RS06385 (FXN58_06380) comQ 1197148..1197450 (+) 303 WP_148324958.1 DUF5374 domain-containing protein Machinery gene
  FXN58_RS06390 (FXN58_06385) recC 1197496..1200885 (+) 3390 WP_148324961.1 exodeoxyribonuclease V subunit gamma -
  FXN58_RS06395 (FXN58_06390) rimI 1200887..1201330 (-) 444 WP_148324963.1 ribosomal protein S18-alanine N-acetyltransferase -
  FXN58_RS06400 (FXN58_06395) - 1201340..1201777 (-) 438 WP_148324966.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11622.56 Da        Isoelectric Point: 10.0636

>NTDB_id=380126 FXN58_RS06385 WP_148324958.1 1197148..1197450(+) (comQ) [Aggregatibacter actinomycetemcomitans strain HK_907]
MILRLRKIDYKGMSLLSLLVTLSLFSGLFLTFNQWGNVQRKSAVEIYQCFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVVCSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=380126 FXN58_RS06385 WP_148324958.1 1197148..1197450(+) (comQ) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGATTTTGCGGTTACGGAAAATTGATTACAAAGGCATGAGCCTATTGTCTTTGTTGGTTACGTTGAGCTTATTCAGCGG
GCTTTTTCTCACCTTCAATCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGTGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTCCTTGGATTGCCTTGTGAATCGCAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGGTTTGTTCGCAAAATCAGGTGTCGGTGAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.122

98

0.55

Multiple sequence alignment