Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FXN58_RS06375 Genome accession   NZ_CP043003
Coordinates   1195801..1196481 (+) Length   226 a.a.
NCBI ID   WP_262404481.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190801..1201481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS06340 (FXN58_06335) tolQ 1191111..1191800 (+) 690 WP_005545584.1 protein TolQ -
  FXN58_RS06345 (FXN58_06340) tolR 1191886..1192308 (+) 423 WP_005545585.1 colicin uptake protein TolR -
  FXN58_RS06350 (FXN58_06345) tolA 1192325..1193509 (+) 1185 WP_148324949.1 cell envelope integrity protein TolA -
  FXN58_RS06355 (FXN58_06350) tolB 1193544..1194824 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  FXN58_RS06360 (FXN58_06355) pal 1194839..1195306 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  FXN58_RS06375 (FXN58_06370) comO 1195801..1196481 (+) 681 WP_262404481.1 type II secretion system protein J Machinery gene
  FXN58_RS06380 (FXN58_06375) - 1196478..1197173 (+) 696 WP_148324955.1 DUF2572 family protein -
  FXN58_RS06385 (FXN58_06380) comQ 1197148..1197450 (+) 303 WP_148324958.1 DUF5374 domain-containing protein Machinery gene
  FXN58_RS06390 (FXN58_06385) recC 1197496..1200885 (+) 3390 WP_148324961.1 exodeoxyribonuclease V subunit gamma -
  FXN58_RS06395 (FXN58_06390) rimI 1200887..1201330 (-) 444 WP_148324963.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26227.92 Da        Isoelectric Point: 7.2203

>NTDB_id=380125 FXN58_RS06375 WP_262404481.1 1195801..1196481(+) (comO) [Aggregatibacter actinomycetemcomitans strain HK_907]
MISVALSSFLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNNKLKQNNLALFEQENMPSAVTI
AQMNGEKNNSCVLFFYDLDANGCIGGNYKGDTCVVNGRNSTKEIERELFGYRLNQNMLETRLTYKSAVKQNCTQEECRRY
TQQSACHHGGWVDLLDEKEYEISQLSFDWLSEQKGIEIRLSGRFKQHKQIEYETSMIVPLLNGTKE

Nucleotide


Download         Length: 681 bp        

>NTDB_id=380125 FXN58_RS06375 WP_262404481.1 1195801..1196481(+) (comO) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGATTTCCGTGGCGCTTTCGAGCTTTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGA
AATGTTACTGCGTTTGCAGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGCGGTT
TTCGTGCCGTGAATAATAAATTAAAGCAAAATAATCTCGCCTTATTCGAACAGGAAAATATGCCGTCAGCGGTGACCATT
GCCCAAATGAATGGTGAGAAAAATAACAGTTGCGTACTGTTCTTTTATGATCTCGATGCCAATGGTTGCATCGGTGGAAA
TTATAAAGGTGATACTTGCGTCGTGAACGGGCGTAACAGCACAAAAGAAATTGAGCGCGAATTATTCGGTTATCGACTTA
ACCAAAACATGCTGGAAACCCGTTTGACCTACAAAAGTGCGGTGAAGCAAAACTGCACACAAGAAGAATGCCGCCGTTAT
ACGCAACAATCCGCTTGTCATCACGGTGGTTGGGTAGATTTACTGGATGAGAAAGAATATGAAATTTCGCAGTTGAGTTT
TGATTGGCTGTCGGAACAGAAAGGAATTGAAATCCGCCTCAGCGGACGTTTTAAACAGCATAAACAGATCGAATATGAAA
CCTCTATGATCGTACCTTTATTGAACGGAACCAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

54.067

92.478

0.5

Multiple sequence alignment