Detailed information NTG0037736

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPSA_RS07320
• Genome accession: NC_017361
• Coordinates: 1539864..1541123 (+)
• Length: 419 a.a.
• NCBI ID: WP_041201153.1
• Uniprot ID: -
• Organism: Helicobacter pylori SouthAfrica7
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1534864..1546123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSA_RS07305 (HPSA_07585)	-	1535829..1537052 (+)	1224	Protein_1418	DNA topoisomerase	-
HPSA_RS07310 (HPSA_07590)	-	1537169..1538332 (+)	1164	WP_000044734.1	type IV secretion system protein	-
HPSA_RS07315 (HPSA_07595)	-	1538332..1539864 (+)	1533	WP_000714779.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPSA_RS07320 (HPSA_07600)	comB10	1539864..1541123 (+)	1260	WP_041201153.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSA_RS07325 (HPSA_07605)	-	1541193..1541486 (+)	294	WP_000422437.1	hypothetical protein	-
HPSA_RS07330 (HPSA_07610)	-	1541479..1541799 (+)	321	WP_000564629.1	hypothetical protein	-
HPSA_RS07335 (HPSA_07615)	-	1541802..1542104 (+)	303	WP_000227831.1	hypothetical protein	-
HPSA_RS07340 (HPSA_07620)	-	1542101..1543072 (+)	972	WP_001013681.1	ATPase, T2SS/T4P/T4SS family	-
HPSA_RS07345 (HPSA_07625)	-	1543069..1543542 (+)	474	WP_000753930.1	hypothetical protein	-
HPSA_RS07350 (HPSA_07630)	-	1543544..1543801 (+)	258	WP_000427016.1	hypothetical protein	-
HPSA_RS07355 (HPSA_07635)	-	1544342..1546033 (+)	1692	WP_411431012.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 47561.89 Da
• Isoelectric Point: 10.1304

>NTDB_id=37736 HPSA_RS07320 WP_041201153.1 1539864..1541123(+) (comB10) [Helicobacter pylori SouthAfrica7]
MGFFRVIRNAPIVSIFIVLMLIFCAWFFLYDDSSPKLVRNYVKGKFPISDYLYKKADKKEIPPQNNVVKQEKEEIKKSCK
GQITDNKGNLIDDDCNIIATQKQVNNLPNLPKDFNKTLIKPQSPSFNYNTANEEEKFRLVILASRISTQKETQPPISIKN
SVSNTKSKEKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAV
LIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLL
IGLTSGLTEAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKN
NEVLAKFFNEEKEQNNDTK

Nucleotide

• Length: 1260 bp

>NTDB_id=37736 HPSA_RS07320 WP_041201153.1 1539864..1541123(+) (comB10) [Helicobacter pylori SouthAfrica7]
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGTAAGTATCTTTATTGTTTTGATGCTTATTTTTTGTGCATGGTT
TTTCCTTTATGATGATAGCTCGCCTAAATTAGTGAGAAATTATGTTAAAGGCAAGTTTCCAATTTCTGACTATCTCTACA
AAAAAGCAGATAAAAAGGAAATCCCACCACAGAACAATGTCGTTAAACAAGAGAAAGAAGAAATTAAAAAATCTTGTAAG
GGTCAGATAACAGATAATAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAATAACTT
ACCAAATTTGCCTAAGGATTTTAATAAAACACTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAATGAAG
AAGAAAAATTCCGTCTGGTGATTTTAGCGTCTCGTATTAGCACTCAAAAAGAAACGCAGCCTCCAATCTCTATAAAAAAT
AGTGTTTCTAACACAAAATCCAAAGAAAAACGAGAACTTGAAAAAGAATACGGATCTAGCGGGTTTAAAAATTTTAAAAG
AAAAAATGTAGCGAGTAGTGAAAACAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTC
CTATTAGTAGTGAAATAGGGGGGAGTAAGATAGTCGCTCAGGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTT
TTAATCCCTAAAGGGAGTAGAGCCATAGGTTATTACAACTCCAATAACAAAATAGGAGAATACCGATTAGAAATTGCTTG
GAATAGGATAATCACGCCTCAAGGGGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGTTATAATGGCA
TGATAGGCACACTCCATAACAAATATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTC
ATAGGTCTTACTAGCGGTCTTACCGAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACAT
GATGATGCAAATGACAAGGCAAACTGGTATCAGCCTAAATAATATTATTGCTCAAATCATGCGAGAGCAAATAAGGATTA
AGCCCATTATCACTATTAGAGAAGGAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAAC
AATGAAGTCTTAGCGAAATTCTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (200-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.483	69.212	0.377