Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPSA_RS07460 Genome accession   NC_017361
Coordinates   1576484..1577797 (+) Length   437 a.a.
NCBI ID   WP_000653593.1    Uniprot ID   -
Organism   Helicobacter pylori SouthAfrica7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1571484..1582797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSA_RS07440 (HPSA_07730) crdR 1571809..1572450 (+) 642 WP_001169780.1 copper response regulator transcription factor CrdR -
  HPSA_RS07445 (HPSA_07735) crdS 1572431..1573618 (+) 1188 WP_080004404.1 copper-sensing histidine kinase CrdS -
  HPSA_RS07450 (HPSA_07740) - 1573621..1575015 (+) 1395 WP_000954031.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPSA_RS07455 (HPSA_07745) - 1575027..1576487 (+) 1461 WP_001089527.1 replicative DNA helicase -
  HPSA_RS07460 (HPSA_07750) comEC/comE3 1576484..1577797 (+) 1314 WP_000653593.1 ComEC/Rec2 family competence protein Machinery gene
  HPSA_RS07465 (HPSA_07755) mqnP 1577868..1578710 (+) 843 WP_234701623.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPSA_RS07470 (HPSA_07760) - 1578703..1579197 (+) 495 WP_014534893.1 hypothetical protein -
  HPSA_RS07475 (HPSA_07765) - 1579210..1579716 (+) 507 WP_000958156.1 DUF6115 domain-containing protein -
  HPSA_RS07480 (HPSA_07770) - 1579710..1580513 (+) 804 WP_000226140.1 phosphatidylserine decarboxylase -
  HPSA_RS07485 (HPSA_07775) nadA 1580503..1581513 (+) 1011 WP_001141876.1 quinolinate synthase NadA -
  HPSA_RS07490 (HPSA_07780) nadC 1581513..1582334 (+) 822 WP_000405628.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50415.46 Da        Isoelectric Point: 9.7403

>NTDB_id=37737 HPSA_RS07460 WP_000653593.1 1576484..1577797(+) (comEC/comE3) [Helicobacter pylori SouthAfrica7]
MKDKTFQGAFELLSTPKEYLWCGVILSLLFAINLYVEYLNYQKLDFSKPTSLDAQILLQYPKTNNQKSYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAHFFGKIKPCSFLESLRSCFFQTFSFSLTRKQDFKSYLRHLIDSAHENALVSNLYRALFIGDSL
NKDLRDKANALGINHLLAISGFHLGILSTSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFMLGYLALLDFLPSFFRA
FLMGLLGFLACFFGIRILSFKLLILACCIAIAIIPKLLFSVGFLLSVCGVWYIFLFLKHARVFLKNSSLWMRFFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLVFIVFFPLSLFLHAVGLGSLLDQMLSMPLIIPTISIFSPLWLLGVHLCLT
ILSARFFKVYLSMHVLSTGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=37737 HPSA_RS07460 WP_000653593.1 1576484..1577797(+) (comEC/comE3) [Helicobacter pylori SouthAfrica7]
TTGAAAGACAAAACCTTTCAAGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTGTGGTGTGGGGTGATTTTAAG
CCTTTTATTTGCCATTAACCTCTATGTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACCAGTTTGGACG
CTCAAATCTTATTGCAATACCCTAAAACAAACAACCAAAAATCCTATTTTGTTTTAAAGCTCCAATCTAAAGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCATTTTTTTGGCAAGATCAAGCCTTGCTC
GTTTTTGGAGTCGTTAAGATCATGCTTTTTTCAAACCTTTTCTTTTTCTTTAACACGCAAACAAGATTTTAAATCTTATT
TGCGCCACTTGATTGATAGCGCCCATGAAAACGCTTTGGTTAGCAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGATAAAGCCAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCACGAGCGTTTATTTCCTTTTTTCGCTTTTTTATACTCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTTTGGGTTTTCATGTTAGGGTATTTGGCACTGTTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGTTTACTAGGGTTTTTGGCATGCTTTTTTGGGATAAGGATTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGCATCGCTATTGCTATAATCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACATGCCAGAGTTTTTTTAAAAAACTCTTCTTTGTGGATGCGATTTTTTCAAGTTATAAGCTTGAGC
GCACTGGTGTTTTTAAACATGCTCATTATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTTTTTAGCATTCC
TTTAGGGTTGGTTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCGGTGGGTTTGGGGTCTTTATTGGATCAAA
TGTTAAGCATGCCTTTAATAATCCCCACAATCTCTATTTTTTCGCCCTTATGGCTTTTGGGGGTGCATTTATGTTTAACG
ATTCTAAGCGCGCGATTTTTTAAAGTCTATTTAAGCATGCATGTTTTAAGCACAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTGGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

89.703

100

0.897

Multiple sequence alignment