Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FKQ53_RS02470 Genome accession   NZ_CP041237
Coordinates   537276..538361 (-) Length   361 a.a.
NCBI ID   WP_141572725.1    Uniprot ID   -
Organism   Pandoraea pnomenusa strain M202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 532276..543361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKQ53_RS02445 (FKQ53_02445) rpoH 532859..533797 (-) 939 WP_023872972.1 RNA polymerase sigma factor RpoH -
  FKQ53_RS02450 (FKQ53_02450) - 534020..534403 (+) 384 WP_023597787.1 nuclear transport factor 2 family protein -
  FKQ53_RS02455 (FKQ53_02455) ybiB 534683..535660 (-) 978 WP_141570709.1 DNA-binding protein YbiB -
  FKQ53_RS02460 (FKQ53_02460) maiA 535856..536503 (+) 648 WP_025249909.1 maleylacetoacetate isomerase -
  FKQ53_RS02465 (FKQ53_02465) - 536511..537137 (+) 627 WP_023872974.1 LysE/ArgO family amino acid transporter -
  FKQ53_RS02470 (FKQ53_02470) pilA 537276..538361 (-) 1086 WP_141572725.1 signal recognition particle-docking protein FtsY Machinery gene
  FKQ53_RS02475 (FKQ53_02475) - 539004..540365 (+) 1362 WP_224785231.1 pitrilysin family protein -
  FKQ53_RS02480 (FKQ53_02480) - 540378..541820 (+) 1443 WP_023597781.1 pitrilysin family protein -
  FKQ53_RS02485 (FKQ53_02485) - 541927..542877 (-) 951 WP_023872980.1 ABC transporter permease -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38007.48 Da        Isoelectric Point: 4.9428

>NTDB_id=370742 FKQ53_RS02470 WP_141572725.1 537276..538361(-) (pilA) [Pandoraea pnomenusa strain M202]
MANVPTSDASETSEWLESPESPESPESLASSEVSASAAPVVVKDASGEAIGEIVSAPAPAPAAKRSWLTRLKAGLSKTSA
GLTGIFVGVKVDENLFEELESALLMSDAGVEATTFLLDALRKKVKAERLTDGEQVKRALHDLLVELLQPLEQSLVLGREA
PLVVMIAGVNGAGKTTSIGKLAKHFQHYGQSVLLAAGDTFRAAAREQLTIWGERNNVAVVSQESGDPAAVVFDAVNAARA
RKIDIVMADTAGRLPTQLHLMEELKKIKRVLGKAADGAPHEVLLVIDANTGQNALAQVKAFDDALQLTGLIVTKLDGTAK
GGILAAIARQRPVPVYFIGVGEKVEDLQPFSAREFADALLG

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=370742 FKQ53_RS02470 WP_141572725.1 537276..538361(-) (pilA) [Pandoraea pnomenusa strain M202]
ATGGCGAATGTCCCAACGTCCGACGCCTCCGAGACATCCGAATGGCTCGAATCGCCCGAATCGCCCGAATCACCCGAATC
GCTCGCATCGTCTGAAGTGTCGGCATCGGCCGCGCCGGTCGTCGTGAAGGATGCCAGCGGCGAAGCCATCGGCGAGATCG
TGTCCGCGCCGGCCCCCGCCCCGGCCGCCAAGCGCTCGTGGCTCACGCGGCTCAAGGCGGGCCTGTCAAAGACGAGCGCC
GGCCTCACGGGCATCTTCGTCGGTGTGAAGGTCGACGAGAACCTGTTCGAGGAACTCGAGAGCGCACTTCTGATGAGCGA
CGCCGGCGTGGAAGCCACCACGTTCCTGCTCGATGCCCTGCGCAAAAAGGTCAAGGCCGAACGGCTGACCGACGGCGAAC
AGGTCAAGCGCGCATTGCACGACCTGCTCGTCGAACTGCTGCAACCGCTCGAGCAAAGCCTCGTGCTGGGCCGCGAAGCG
CCGCTGGTCGTGATGATCGCGGGCGTGAACGGCGCGGGCAAGACGACCAGCATCGGCAAGCTTGCCAAGCACTTCCAGCA
CTACGGTCAGTCGGTTCTCCTTGCCGCCGGCGACACGTTCCGCGCGGCCGCCCGCGAGCAGCTCACGATCTGGGGCGAGC
GCAACAACGTGGCGGTCGTCTCGCAGGAGAGCGGCGATCCGGCCGCCGTCGTGTTCGACGCGGTCAACGCCGCCCGCGCC
CGCAAGATCGACATCGTGATGGCCGATACGGCCGGTCGCCTGCCCACGCAGCTGCATCTGATGGAAGAACTCAAGAAGAT
CAAGCGCGTGCTGGGCAAGGCTGCCGACGGCGCGCCGCACGAAGTGCTGCTCGTGATCGATGCCAATACCGGTCAAAACG
CACTCGCGCAGGTCAAGGCGTTCGACGACGCCCTGCAGCTCACCGGCCTCATCGTGACCAAGCTCGACGGCACCGCCAAG
GGCGGCATCCTCGCCGCGATCGCCCGCCAGCGTCCCGTGCCGGTGTACTTCATCGGCGTGGGCGAAAAGGTCGAGGACCT
GCAACCGTTCTCGGCGCGAGAGTTCGCCGACGCCCTGCTCGGGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(162-361)

SRP54-type protein, helical bundle domain (SRP54_N)

(81-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

59.475

95.014

0.565

Multiple sequence alignment