Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FIM06_RS17375 Genome accession   NZ_CP041144
Coordinates   3456033..3456722 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain UCMB5044     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3451033..3461722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS17340 (FIM06_3239) - 3451230..3451712 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FIM06_RS17345 (FIM06_3240) flgM 3451727..3451993 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  FIM06_RS17350 (FIM06_3241) - 3452063..3452482 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  FIM06_RS17355 (FIM06_3242) comFC 3452557..3453246 (-) 690 WP_199791910.1 phosphoribosyltransferase family protein Machinery gene
  FIM06_RS17360 (FIM06_3243) - 3453252..3453536 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  FIM06_RS17365 (FIM06_3244) comFA 3453594..3454979 (-) 1386 WP_105937245.1 DEAD/DEAH box helicase Machinery gene
  FIM06_RS17370 (FIM06_3245) - 3455087..3455935 (-) 849 WP_105937244.1 DegV family protein -
  FIM06_RS17375 (FIM06_3246) degU 3456033..3456722 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FIM06_RS17380 (FIM06_3247) degS 3456799..3457962 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  FIM06_RS17385 (FIM06_3248) - 3458185..3458832 (+) 648 WP_007614107.1 YigZ family protein -
  FIM06_RS17390 (FIM06_3249) - 3458837..3460057 (+) 1221 WP_105937243.1 LCP family protein -
  FIM06_RS17395 (FIM06_3250) - 3460156..3461232 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=369776 FIM06_RS17375 WP_003219701.1 3456033..3456722(-) (degU) [Bacillus velezensis strain UCMB5044]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=369776 FIM06_RS17375 WP_003219701.1 3456033..3456722(-) (degU) [Bacillus velezensis strain UCMB5044]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGCAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment