Detailed information NTG0036854

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: SAA6159_RS08295
• Genome accession: NC_017338
• Coordinates: 1724475..1725161 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692877.1
• Uniprot ID: -
• Organism: Staphylococcus aureus subsp. aureus JKD6159
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1719475..1730161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAA6159_RS08250 (SAA6159_01577)	rpmA	1720121..1720405 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAA6159_RS08255 (SAA6159_01578)	-	1720417..1720737 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SAA6159_RS08260 (SAA6159_01579)	rplU	1720743..1721051 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SAA6159_RS08265 (SAA6159_01580)	mreD	1721413..1721943 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
SAA6159_RS08270 (SAA6159_01581)	mreC	1721943..1722785 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
SAA6159_RS08275 (SAA6159_01582)	-	1722983..1723102 (-)	120	WP_000840603.1	hypothetical protein	-
SAA6159_RS08280 (SAA6159_01583)	-	1723176..1723649 (-)	474	WP_001236737.1	DUF4930 family protein	-
SAA6159_RS08285 (SAA6159_01584)	-	1723809..1724006 (+)	198	WP_000025835.1	hypothetical protein	-
SAA6159_RS08290 (SAA6159_01585)	-	1724123..1724407 (-)	285	WP_000171863.1	hypothetical protein	-
SAA6159_RS08295 (SAA6159_01586)	ysxA/radC	1724475..1725161 (-)	687	WP_000692877.1	DNA repair protein RadC	Machinery gene
SAA6159_RS08300 (SAA6159_01587)	-	1725158..1725865 (-)	708	WP_000261111.1	A24 family peptidase	-
SAA6159_RS08305 (SAA6159_01588)	-	1726127..1727398 (-)	1272	WP_001108334.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
SAA6159_RS08310 (SAA6159_01589)	-	1727411..1730041 (-)	2631	WP_000425366.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=36854 SAA6159_RS08295 WP_000692877.1 1724475..1725161(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus JKD6159]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDILTTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=36854 SAA6159_RS08295 WP_000692877.1 1724475..1725161(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus JKD6159]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CTTAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377