Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FEO95_RS18165 Genome accession   NZ_CP040432
Coordinates   3951051..3951488 (-) Length   145 a.a.
NCBI ID   WP_006387162.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain sm-RA9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3944773..3964528 3951051..3951488 within 0


Gene organization within MGE regions


Location: 3944773..3964528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO95_RS18140 (FEO95_18245) - 3944773..3946002 (+) 1230 WP_154354806.1 glycosyltransferase -
  FEO95_RS18145 (FEO95_18250) - 3945992..3947239 (+) 1248 WP_006387125.1 hypothetical protein -
  FEO95_RS18150 (FEO95_18255) - 3947491..3948582 (+) 1092 WP_176698932.1 glycosyltransferase family 4 protein -
  FEO95_RS18155 (FEO95_18260) - 3948626..3949042 (-) 417 WP_032972479.1 pilin -
  FEO95_RS18160 (FEO95_18265) - 3949046..3950971 (-) 1926 WP_154354807.1 hypothetical protein -
  FEO95_RS18165 (FEO95_18270) pilE 3951051..3951488 (-) 438 WP_006387162.1 pilin Machinery gene
  FEO95_RS18170 (FEO95_18275) pilC 3951843..3953099 (+) 1257 WP_006387164.1 type II secretion system F family protein Machinery gene
  FEO95_RS18175 (FEO95_18280) - 3953107..3953970 (+) 864 WP_012511940.1 A24 family peptidase -
  FEO95_RS18180 (FEO95_18285) coaE 3953982..3954593 (+) 612 WP_006387168.1 dephospho-CoA kinase -
  FEO95_RS18185 (FEO95_18290) - 3954770..3956137 (-) 1368 WP_012511942.1 HAMP domain-containing sensor histidine kinase -
  FEO95_RS18190 (FEO95_18295) - 3956100..3956777 (-) 678 WP_005410804.1 response regulator transcription factor -
  FEO95_RS18195 (FEO95_18300) - 3956786..3957256 (-) 471 WP_006387227.1 hypothetical protein -
  FEO95_RS18200 (FEO95_18305) - 3957346..3957822 (-) 477 WP_006387229.1 hypothetical protein -
  FEO95_RS18205 (FEO95_18310) rimK 3958068..3958946 (-) 879 WP_006387331.1 30S ribosomal protein S6--L-glutamate ligase -
  FEO95_RS18210 (FEO95_18315) - 3959078..3959500 (+) 423 WP_006387333.1 thioesterase family protein -
  FEO95_RS18215 (FEO95_18320) - 3959626..3960807 (-) 1182 WP_006387336.1 hypothetical protein -
  FEO95_RS18220 (FEO95_18325) - 3960847..3961251 (-) 405 WP_006387338.1 DUF805 domain-containing protein -
  FEO95_RS18225 (FEO95_18330) - 3961670..3962032 (-) 363 WP_006387340.1 hypothetical protein -
  FEO95_RS18230 (FEO95_18335) - 3962573..3963538 (+) 966 WP_141651039.1 hypothetical protein -
  FEO95_RS18235 - 3963900..3964043 (-) 144 WP_154354808.1 hypothetical protein -
  FEO95_RS18240 (FEO95_18340) - 3964044..3964370 (-) 327 WP_006387409.1 hypothetical protein -
  FEO95_RS18245 - 3964373..3964528 (-) 156 WP_154354809.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 14707.94 Da        Isoelectric Point: 9.3535

>NTDB_id=364384 FEO95_RS18165 WP_006387162.1 3951051..3951488(-) (pilE) [Stenotrophomonas maltophilia strain sm-RA9]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYVARSQVSEAMTLSSGAKTAVTEYYADKGAFPTTNAMAGLAGASSITG
KYVASVTVGANGVITAKMKGAASVSSKVAGGDFALIPADAGGSITWDCKGSATTIDAKYRPSSCR

Nucleotide


Download         Length: 438 bp        

>NTDB_id=364384 FEO95_RS18165 WP_006387162.1 3951051..3951488(-) (pilE) [Stenotrophomonas maltophilia strain sm-RA9]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCCATCCTGGCTGCCATTGCGCT
GCCGGCTTACCAGGACTATGTGGCACGCTCGCAGGTTTCCGAAGCGATGACCCTGAGCTCGGGTGCCAAGACTGCTGTTA
CCGAGTACTACGCCGACAAGGGCGCCTTCCCGACCACCAATGCAATGGCCGGCCTCGCTGGTGCGTCGTCGATCACCGGG
AAGTACGTCGCCAGCGTGACCGTTGGTGCAAACGGCGTGATCACCGCCAAGATGAAGGGCGCGGCCTCGGTGAGCTCCAA
GGTTGCCGGTGGCGACTTTGCGCTGATCCCGGCGGACGCTGGCGGCTCGATCACCTGGGACTGCAAGGGCTCCGCCACGA
CCATCGACGCCAAGTACCGTCCGTCGTCCTGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-145)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

49.359

100

0.531
  pilE Neisseria gonorrhoeae MS11

48.408

100

0.524
  pilA2 Legionella pneumophila str. Paris

51.049

98.621

0.503
  pilA2 Legionella pneumophila strain ERS1305867

50.35

98.621

0.497
  comP Acinetobacter baylyi ADP1

45.161

100

0.483
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.5

100

0.476
  pilA/pilA1 Eikenella corrodens VA1

43.312

100

0.469
  pilA Ralstonia pseudosolanacearum GMI1000

38.922

100

0.448
  pilA Acinetobacter baumannii strain A118

39.865

100

0.407
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.549

97.931

0.407
  pilA Haemophilus influenzae Rd KW20

40.288

95.862

0.386
  pilA Vibrio cholerae strain A1552

37.086

100

0.386
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

37.086

100

0.386
  pilA Vibrio cholerae C6706

37.086

100

0.386
  pilA Vibrio campbellii strain DS40M4

36.242

100

0.372
  pilA Haemophilus influenzae 86-028NP

37.857

96.552

0.366

Multiple sequence alignment