Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FEO95_RS18170 Genome accession   NZ_CP040432
Coordinates   3951843..3953099 (+) Length   418 a.a.
NCBI ID   WP_006387164.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain sm-RA9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3944773..3964528 3951843..3953099 within 0


Gene organization within MGE regions


Location: 3944773..3964528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO95_RS18140 (FEO95_18245) - 3944773..3946002 (+) 1230 WP_154354806.1 glycosyltransferase -
  FEO95_RS18145 (FEO95_18250) - 3945992..3947239 (+) 1248 WP_006387125.1 hypothetical protein -
  FEO95_RS18150 (FEO95_18255) - 3947491..3948582 (+) 1092 WP_176698932.1 glycosyltransferase family 4 protein -
  FEO95_RS18155 (FEO95_18260) - 3948626..3949042 (-) 417 WP_032972479.1 pilin -
  FEO95_RS18160 (FEO95_18265) - 3949046..3950971 (-) 1926 WP_154354807.1 hypothetical protein -
  FEO95_RS18165 (FEO95_18270) pilE 3951051..3951488 (-) 438 WP_006387162.1 pilin Machinery gene
  FEO95_RS18170 (FEO95_18275) pilC 3951843..3953099 (+) 1257 WP_006387164.1 type II secretion system F family protein Machinery gene
  FEO95_RS18175 (FEO95_18280) - 3953107..3953970 (+) 864 WP_012511940.1 A24 family peptidase -
  FEO95_RS18180 (FEO95_18285) coaE 3953982..3954593 (+) 612 WP_006387168.1 dephospho-CoA kinase -
  FEO95_RS18185 (FEO95_18290) - 3954770..3956137 (-) 1368 WP_012511942.1 HAMP domain-containing sensor histidine kinase -
  FEO95_RS18190 (FEO95_18295) - 3956100..3956777 (-) 678 WP_005410804.1 response regulator transcription factor -
  FEO95_RS18195 (FEO95_18300) - 3956786..3957256 (-) 471 WP_006387227.1 hypothetical protein -
  FEO95_RS18200 (FEO95_18305) - 3957346..3957822 (-) 477 WP_006387229.1 hypothetical protein -
  FEO95_RS18205 (FEO95_18310) rimK 3958068..3958946 (-) 879 WP_006387331.1 30S ribosomal protein S6--L-glutamate ligase -
  FEO95_RS18210 (FEO95_18315) - 3959078..3959500 (+) 423 WP_006387333.1 thioesterase family protein -
  FEO95_RS18215 (FEO95_18320) - 3959626..3960807 (-) 1182 WP_006387336.1 hypothetical protein -
  FEO95_RS18220 (FEO95_18325) - 3960847..3961251 (-) 405 WP_006387338.1 DUF805 domain-containing protein -
  FEO95_RS18225 (FEO95_18330) - 3961670..3962032 (-) 363 WP_006387340.1 hypothetical protein -
  FEO95_RS18230 (FEO95_18335) - 3962573..3963538 (+) 966 WP_141651039.1 hypothetical protein -
  FEO95_RS18235 - 3963900..3964043 (-) 144 WP_154354808.1 hypothetical protein -
  FEO95_RS18240 (FEO95_18340) - 3964044..3964370 (-) 327 WP_006387409.1 hypothetical protein -
  FEO95_RS18245 - 3964373..3964528 (-) 156 WP_154354809.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45611.97 Da        Isoelectric Point: 10.2171

>NTDB_id=364385 FEO95_RS18170 WP_006387164.1 3951843..3953099(+) (pilC) [Stenotrophomonas maltophilia strain sm-RA9]
MSVSRSAIKKEPVARSTMDLQPFVWEGTDKRGVKMKGEQVAKNANLLRAELRRQGINPGTVKLKPKPLFGAAGSKVSPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKMVDGIRADIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVIAVALLVSSILLIWVVPQFEDVFRGFGADLPAFTQMIVATSRFMVSWWWL
IAIVVIGSIVGFTMAYKRSPKMQHGMDRLILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNTVYEH
AVLRMRDDVSVGYPVNMAMKQTALFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGIIV
GGLVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=364385 FEO95_RS18170 WP_006387164.1 3951843..3953099(+) (pilC) [Stenotrophomonas maltophilia strain sm-RA9]
ATGTCTGTCAGTCGCAGTGCAATCAAAAAGGAGCCCGTGGCGCGTAGCACCATGGATCTACAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGGGTGAAGATGAAAGGGGAGCAGGTCGCAAAGAACGCGAACCTGCTGCGGGCGGAACTACGGCGTC
AGGGCATCAACCCCGGAACAGTAAAGCTCAAGCCCAAGCCCCTGTTCGGAGCAGCCGGCAGCAAAGTTTCGCCGAAGGAC
ATTGCCTTCTTCAGCCGTCAGATGGCGACGATGATGAAGTCTGGTGTGCCGATCGTCTCAGCGCTGGACATCATCGCCAG
TGGACACAAGAACCCACGCATGAAGAAGATGGTGGATGGCATACGCGCCGATATCGAGGGCGGCTCATCTCTTCATGAGG
CAATCAGCAAGCACCCAGTGCAGTTCGACGAACTCTATCGCAACCTCGTGCGAGCGGGTGAAGGCGCCGGTGTACTGGAA
ACGGTGCTTGATACTGTGGCCAACTACAAAGAGAACATCGAAGCCCTGAAGGGCAAGATCAAAAAGGCCCTGTTCTACCC
TGCAATGGTCATTGCGGTGGCGCTCTTGGTCAGCTCGATCCTTCTGATCTGGGTGGTTCCGCAGTTTGAAGACGTTTTCA
GGGGATTTGGTGCCGATCTGCCTGCATTTACTCAGATGATCGTGGCCACATCCCGGTTCATGGTCTCTTGGTGGTGGCTG
ATCGCGATTGTCGTCATCGGCAGCATCGTCGGCTTCACCATGGCCTACAAACGTTCGCCAAAGATGCAGCACGGGATGGA
TCGCTTGATCCTGAAGGTACCAGTCATTGGCCAGATCATGCATAACAGCTCGATTGCCCGCTTTGCCCGCACCACCGCTG
TCACCTTCAAGGCCGGTGTACCACTAGTGGAGGCCTTGGGCATTGTGGCCGGAGCCACCGGCAATACGGTTTACGAGCAT
GCCGTATTGCGCATGCGCGACGACGTTTCGGTCGGTTATCCGGTCAACATGGCTATGAAGCAGACTGCTCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGTGAAGAAGCTGGCGCCTTGGACGCCATGCTTTTCAAGGTGGCCGAGTACTATG
AGCAGGAAGTCAACAACGCCGTTGACGCACTAAGCAGCCTGCTCGAGCCAATGATCATGGTGTTCATTGGTATTATCGTG
GGTGGCCTGGTCATTGGCATGTACCTCCCCATCTTCAAATTGGCATCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.737

0.51
  pilC Legionella pneumophila strain ERS1305867

53.383

95.455

0.51
  pilC Acinetobacter baylyi ADP1

51.724

97.129

0.502
  pilC Acinetobacter baumannii D1279779

51.637

94.976

0.49
  pilG Neisseria gonorrhoeae MS11

44.081

94.976

0.419
  pilG Neisseria meningitidis 44/76-A

43.577

94.976

0.414
  pilC Vibrio cholerae strain A1552

40.988

96.89

0.397
  pilC Vibrio campbellii strain DS40M4

40

95.694

0.383

Multiple sequence alignment