Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | FD725_RS25245 | Genome accession | NZ_CP040297 |
| Coordinates | 5860503..5861621 (+) | Length | 372 a.a. |
| NCBI ID | WP_179050684.1 | Uniprot ID | - |
| Organism | Nostoc sp. TCL26-01 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5855503..5866621
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FD725_RS25235 (FD725_25205) | grpE | 5857311..5858048 (-) | 738 | WP_179050682.1 | nucleotide exchange factor GrpE | - |
| FD725_RS25240 (FD725_25210) | pilB/pilB1 | 5858400..5860412 (+) | 2013 | WP_179050683.1 | GspE/PulE family protein | Machinery gene |
| FD725_RS25245 (FD725_25215) | pilT | 5860503..5861621 (+) | 1119 | WP_179050684.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| FD725_RS25250 (FD725_25220) | - | 5861701..5862924 (+) | 1224 | WP_179050685.1 | type II secretion system F family protein | - |
| FD725_RS25255 (FD725_25225) | - | 5863022..5863552 (+) | 531 | WP_179050686.1 | hypothetical protein | - |
| FD725_RS25260 (FD725_25230) | - | 5863573..5864880 (-) | 1308 | WP_179050687.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 41034.41 Da Isoelectric Point: 7.4126
>NTDB_id=363040 FD725_RS25245 WP_179050684.1 5860503..5861621(+) (pilT) [Nostoc sp. TCL26-01]
MEMMIEDLMEQMIEMGGSDLHLSAGLPPYFRISGKLTPIGEEKLTADQCQRLIFSMLNNTQRKTLEQTWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEKLGLPDVVREMCDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLNEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSASQTVD
RIIDVFPHERQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRIMAQEIMIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADYYKAGTISFEAAMSKTSKPDEIQRLIGPATPSQNAKPGAVKAH
MEMMIEDLMEQMIEMGGSDLHLSAGLPPYFRISGKLTPIGEEKLTADQCQRLIFSMLNNTQRKTLEQTWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEKLGLPDVVREMCDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLNEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSASQTVD
RIIDVFPHERQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRIMAQEIMIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADYYKAGTISFEAAMSKTSKPDEIQRLIGPATPSQNAKPGAVKAH
Nucleotide
Download Length: 1119 bp
>NTDB_id=363040 FD725_RS25245 WP_179050684.1 5860503..5861621(+) (pilT) [Nostoc sp. TCL26-01]
ATGGAAATGATGATTGAAGACTTGATGGAACAGATGATTGAAATGGGTGGCTCGGATTTGCACTTATCCGCAGGTTTACC
GCCCTATTTCCGCATCAGTGGTAAACTCACACCCATCGGCGAAGAGAAACTGACCGCAGATCAGTGTCAAAGACTCATTT
TTAGTATGCTCAATAATACCCAGCGTAAAACCCTAGAGCAGACATGGGAATTAGATTGTTCTTACGGTGTCAAGGGTTTG
GCTCGCTTCCGGGTCAATGTTTATAAAGAACGTGGTGCTTATGCTGCTTGTTTAAGAGCGCTGAGTTCTAAAATTCCTAA
CTTTGAAAAATTAGGTCTACCAGATGTAGTCCGAGAAATGTGCGACAAACCTAGAGGATTAATTCTGGTAACAGGCCCCA
CAGGTTCCGGTAAAACCACGACTTTGGCGGCAATGATTGATTTAATTAATCGCACTAAAGCCGAGCATATCCTGACGGTA
GAAGACCCCATTGAATTTGTCTATGAACCAATTAAAAGCTTAGTTCATCAACGCCAATTGAATGAAGATACCAAAAGTTT
TGCTAATGCTTTAAAAGCAGCTTTACGGGAAGATCCAGATATTATTCTCGTGGGAGAAATGCGTGATTTAGAAACTATTT
CTTTGGCAATTTCCGCAGCAGAAACCGGACACTTAGTCTTTGGTACACTACACACCAGTTCGGCTTCACAAACTGTTGAC
CGGATTATTGACGTTTTCCCCCACGAACGACAAACCCAAGTACGGGTACAGTTATCTAACTCTTTAGTAGCAGTATTTAG
CCAAACCTTAGTGCCAAAGAAAAATCCCAAGCCAGGTGAATATGGTCGGATCATGGCACAAGAAATTATGATTGTTACCC
CTGCTATTTCTAACTTGATTCGTGAAGGTAAAACATCACAAATTTATTCAGCAATTCAGACTGGTGGCAAGCTAGGAATG
CAAACTTTAGAGAAAGTCTTAGCAGATTATTACAAAGCCGGAACCATCTCCTTTGAAGCAGCGATGTCGAAAACCTCAAA
ACCAGACGAAATCCAACGTCTCATTGGCCCTGCTACCCCATCACAAAATGCTAAACCCGGAGCAGTAAAAGCACACTAA
ATGGAAATGATGATTGAAGACTTGATGGAACAGATGATTGAAATGGGTGGCTCGGATTTGCACTTATCCGCAGGTTTACC
GCCCTATTTCCGCATCAGTGGTAAACTCACACCCATCGGCGAAGAGAAACTGACCGCAGATCAGTGTCAAAGACTCATTT
TTAGTATGCTCAATAATACCCAGCGTAAAACCCTAGAGCAGACATGGGAATTAGATTGTTCTTACGGTGTCAAGGGTTTG
GCTCGCTTCCGGGTCAATGTTTATAAAGAACGTGGTGCTTATGCTGCTTGTTTAAGAGCGCTGAGTTCTAAAATTCCTAA
CTTTGAAAAATTAGGTCTACCAGATGTAGTCCGAGAAATGTGCGACAAACCTAGAGGATTAATTCTGGTAACAGGCCCCA
CAGGTTCCGGTAAAACCACGACTTTGGCGGCAATGATTGATTTAATTAATCGCACTAAAGCCGAGCATATCCTGACGGTA
GAAGACCCCATTGAATTTGTCTATGAACCAATTAAAAGCTTAGTTCATCAACGCCAATTGAATGAAGATACCAAAAGTTT
TGCTAATGCTTTAAAAGCAGCTTTACGGGAAGATCCAGATATTATTCTCGTGGGAGAAATGCGTGATTTAGAAACTATTT
CTTTGGCAATTTCCGCAGCAGAAACCGGACACTTAGTCTTTGGTACACTACACACCAGTTCGGCTTCACAAACTGTTGAC
CGGATTATTGACGTTTTCCCCCACGAACGACAAACCCAAGTACGGGTACAGTTATCTAACTCTTTAGTAGCAGTATTTAG
CCAAACCTTAGTGCCAAAGAAAAATCCCAAGCCAGGTGAATATGGTCGGATCATGGCACAAGAAATTATGATTGTTACCC
CTGCTATTTCTAACTTGATTCGTGAAGGTAAAACATCACAAATTTATTCAGCAATTCAGACTGGTGGCAAGCTAGGAATG
CAAACTTTAGAGAAAGTCTTAGCAGATTATTACAAAGCCGGAACCATCTCCTTTGAAGCAGCGATGTCGAAAACCTCAAA
ACCAGACGAAATCCAACGTCTCATTGGCCCTGCTACCCCATCACAAAATGCTAAACCCGGAGCAGTAAAAGCACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
55.043 |
93.28 |
0.513 |
| pilT | Pseudomonas stutzeri DSM 10701 |
54.155 |
93.817 |
0.508 |
| pilT | Legionella pneumophila strain Lp02 |
53.026 |
93.28 |
0.495 |
| pilT | Acinetobacter baylyi ADP1 |
53.026 |
93.28 |
0.495 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.026 |
93.28 |
0.495 |
| pilT | Acinetobacter baumannii strain A118 |
52.738 |
93.28 |
0.492 |
| pilT | Acinetobacter nosocomialis M2 |
52.738 |
93.28 |
0.492 |
| pilT | Acinetobacter baumannii D1279779 |
52.738 |
93.28 |
0.492 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.169 |
95.43 |
0.46 |
| pilT | Neisseria gonorrhoeae MS11 |
49.853 |
91.129 |
0.454 |
| pilT | Vibrio cholerae strain A1552 |
49.415 |
91.935 |
0.454 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.415 |
91.935 |
0.454 |
| pilT | Neisseria meningitidis 8013 |
49.558 |
91.129 |
0.452 |
| pilU | Acinetobacter baylyi ADP1 |
38.244 |
94.892 |
0.363 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.244 |
94.892 |
0.363 |