Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | ALVIN_RS13060 | Genome accession | NC_013851 |
| Coordinates | 2953080..2954117 (+) | Length | 345 a.a. |
| NCBI ID | WP_012971794.1 | Uniprot ID | D3RPD6 |
| Organism | Allochromatium vinosum DSM 180 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2948080..2959117
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALVIN_RS13045 (Alvin_2613) | - | 2950008..2951189 (+) | 1182 | WP_012971791.1 | response regulator | - |
| ALVIN_RS13050 (Alvin_2614) | purK | 2951337..2952491 (+) | 1155 | WP_012971792.1 | 5-(carboxyamino)imidazole ribonucleotide synthase | - |
| ALVIN_RS13055 (Alvin_2615) | purE | 2952488..2953003 (+) | 516 | WP_012971793.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| ALVIN_RS13060 (Alvin_2616) | pilT | 2953080..2954117 (+) | 1038 | WP_012971794.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ALVIN_RS13065 (Alvin_2617) | pilU | 2954149..2955303 (+) | 1155 | WP_012971795.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ALVIN_RS13070 (Alvin_2618) | - | 2955313..2956386 (-) | 1074 | WP_012971796.1 | HD domain-containing phosphohydrolase | - |
| ALVIN_RS13075 (Alvin_2619) | - | 2956440..2957687 (-) | 1248 | WP_223295219.1 | PP2C family protein-serine/threonine phosphatase | - |
| ALVIN_RS18340 | - | 2957689..2958375 (-) | 687 | WP_407637041.1 | methyl-accepting chemotaxis protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38293.15 Da Isoelectric Point: 7.6751
>NTDB_id=36275 ALVIN_RS13060 WP_012971794.1 2953080..2954117(+) (pilT) [Allochromatium vinosum DSM 180]
MDIAELLAFSVKNNASDLHLSSGLPPMIRVDGDMRRINVPPLEHRAVHSLVYDIMNDKQRKDYEEFLETDFSFEIPGVAR
FRVNAFNQKRGAGAVFRTIPSKVLTLEELKAPKSFKDIIDVPRGLILVTGPTGSGKSTTLAAMVDHINDNKYEHILTIED
PIEFVHVSKKCLVNQREVHKDTLGFSEALRSALRQDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPAAEKDMVRAMLSESLRAVISQTLLKKTGGGRIAAHEIMIGTPAIRNLIREAKIAQMYSAIQTGQAHGMQTLDQNL
KELLSKGLIARQDARAKAQSKEDFH
MDIAELLAFSVKNNASDLHLSSGLPPMIRVDGDMRRINVPPLEHRAVHSLVYDIMNDKQRKDYEEFLETDFSFEIPGVAR
FRVNAFNQKRGAGAVFRTIPSKVLTLEELKAPKSFKDIIDVPRGLILVTGPTGSGKSTTLAAMVDHINDNKYEHILTIED
PIEFVHVSKKCLVNQREVHKDTLGFSEALRSALRQDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPAAEKDMVRAMLSESLRAVISQTLLKKTGGGRIAAHEIMIGTPAIRNLIREAKIAQMYSAIQTGQAHGMQTLDQNL
KELLSKGLIARQDARAKAQSKEDFH
Nucleotide
Download Length: 1038 bp
>NTDB_id=36275 ALVIN_RS13060 WP_012971794.1 2953080..2954117(+) (pilT) [Allochromatium vinosum DSM 180]
GTGGACATCGCCGAACTGCTCGCCTTCAGCGTCAAGAACAATGCCTCGGACCTGCATCTGTCGTCCGGGTTGCCGCCCAT
GATCCGGGTCGACGGCGACATGCGCCGCATCAATGTTCCACCCCTGGAACATCGCGCAGTCCATTCGCTGGTCTACGACA
TCATGAACGACAAGCAGCGCAAGGACTACGAGGAGTTCCTGGAGACCGACTTTTCGTTCGAGATCCCCGGCGTGGCGCGT
TTCCGCGTCAACGCCTTCAACCAGAAGCGCGGCGCGGGCGCCGTCTTCCGCACCATCCCCTCCAAGGTGCTGACGCTCGA
AGAGCTCAAGGCGCCCAAGAGCTTCAAGGACATCATCGATGTGCCGCGCGGGCTGATCCTGGTCACGGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTTGCGGCAATGGTCGACCACATCAACGACAACAAGTACGAACATATCCTCACCATCGAGGAT
CCGATCGAGTTCGTGCACGTCAGCAAGAAGTGTCTGGTCAACCAGCGCGAGGTGCACAAGGACACCCTCGGTTTCAGCGA
GGCGCTGCGCTCGGCCCTGCGCCAGGACCCGGACATCATCCTGGTCGGCGAGATGCGCGACCTGGAGACCATCCGGCTGG
CCCTGACCGCCGCCGAGACCGGCCATCTGGTGTTCGGCACCCTGCACACCACCTCGGCGGCCAAGACCATCGACCGCATC
ATTGACGTCTTCCCGGCCGCCGAGAAGGACATGGTGCGCGCCATGCTTTCCGAGTCATTGCGCGCGGTCATCTCGCAGAC
GCTGCTGAAGAAGACCGGCGGCGGACGTATCGCCGCGCACGAGATCATGATCGGCACCCCGGCCATCCGCAACCTCATCC
GCGAGGCCAAGATCGCCCAGATGTATTCGGCGATCCAAACCGGCCAGGCGCACGGGATGCAGACCCTGGATCAGAATCTC
AAGGAGCTCCTGAGCAAGGGACTCATCGCCCGCCAGGACGCCCGCGCCAAAGCGCAGAGCAAAGAGGATTTCCATTGA
GTGGACATCGCCGAACTGCTCGCCTTCAGCGTCAAGAACAATGCCTCGGACCTGCATCTGTCGTCCGGGTTGCCGCCCAT
GATCCGGGTCGACGGCGACATGCGCCGCATCAATGTTCCACCCCTGGAACATCGCGCAGTCCATTCGCTGGTCTACGACA
TCATGAACGACAAGCAGCGCAAGGACTACGAGGAGTTCCTGGAGACCGACTTTTCGTTCGAGATCCCCGGCGTGGCGCGT
TTCCGCGTCAACGCCTTCAACCAGAAGCGCGGCGCGGGCGCCGTCTTCCGCACCATCCCCTCCAAGGTGCTGACGCTCGA
AGAGCTCAAGGCGCCCAAGAGCTTCAAGGACATCATCGATGTGCCGCGCGGGCTGATCCTGGTCACGGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTTGCGGCAATGGTCGACCACATCAACGACAACAAGTACGAACATATCCTCACCATCGAGGAT
CCGATCGAGTTCGTGCACGTCAGCAAGAAGTGTCTGGTCAACCAGCGCGAGGTGCACAAGGACACCCTCGGTTTCAGCGA
GGCGCTGCGCTCGGCCCTGCGCCAGGACCCGGACATCATCCTGGTCGGCGAGATGCGCGACCTGGAGACCATCCGGCTGG
CCCTGACCGCCGCCGAGACCGGCCATCTGGTGTTCGGCACCCTGCACACCACCTCGGCGGCCAAGACCATCGACCGCATC
ATTGACGTCTTCCCGGCCGCCGAGAAGGACATGGTGCGCGCCATGCTTTCCGAGTCATTGCGCGCGGTCATCTCGCAGAC
GCTGCTGAAGAAGACCGGCGGCGGACGTATCGCCGCGCACGAGATCATGATCGGCACCCCGGCCATCCGCAACCTCATCC
GCGAGGCCAAGATCGCCCAGATGTATTCGGCGATCCAAACCGGCCAGGCGCACGGGATGCAGACCCTGGATCAGAATCTC
AAGGAGCTCCTGAGCAAGGGACTCATCGCCCGCCAGGACGCCCGCGCCAAAGCGCAGAGCAAAGAGGATTTCCATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
82.267 |
99.71 |
0.82 |
| pilT | Pseudomonas stutzeri DSM 10701 |
81.686 |
99.71 |
0.814 |
| pilT | Acinetobacter nosocomialis M2 |
81.395 |
99.71 |
0.812 |
| pilT | Acinetobacter baumannii D1279779 |
81.105 |
99.71 |
0.809 |
| pilT | Acinetobacter baumannii strain A118 |
81.105 |
99.71 |
0.809 |
| pilT | Acinetobacter baylyi ADP1 |
80.233 |
99.71 |
0.8 |
| pilT | Legionella pneumophila strain Lp02 |
74.128 |
99.71 |
0.739 |
| pilT | Legionella pneumophila strain ERS1305867 |
74.128 |
99.71 |
0.739 |
| pilT | Neisseria meningitidis 8013 |
68.986 |
100 |
0.69 |
| pilT | Neisseria gonorrhoeae MS11 |
68.696 |
100 |
0.687 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.322 |
98.261 |
0.681 |
| pilT | Vibrio cholerae strain A1552 |
69.322 |
98.261 |
0.681 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.014 |
100 |
0.51 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.159 |
100 |
0.412 |
| pilU | Vibrio cholerae strain A1552 |
40.58 |
100 |
0.406 |
| pilU | Acinetobacter baylyi ADP1 |
39.306 |
100 |
0.394 |