Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   THTHE16_RS00635 Genome accession   NC_017272
Coordinates   115856..116887 (-) Length   343 a.a.
NCBI ID   WP_014509757.1    Uniprot ID   -
Organism   Thermus thermophilus SG0.5JP17-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110856..121887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THTHE16_RS00610 (Ththe16_0115) pilD 111846..112913 (+) 1068 WP_014509752.1 prepilin peptidase Machinery gene
  THTHE16_RS00615 (Ththe16_0116) - 112921..113451 (+) 531 WP_014509753.1 DUF2939 domain-containing protein -
  THTHE16_RS00620 (Ththe16_0117) - 113462..114382 (+) 921 WP_014509754.1 nitroreductase family protein -
  THTHE16_RS00625 (Ththe16_0118) - 114336..115112 (-) 777 WP_014509755.1 C40 family peptidase -
  THTHE16_RS00630 (Ththe16_0119) - 115113..115871 (-) 759 WP_014509756.1 DUF721 domain-containing protein -
  THTHE16_RS00635 (Ththe16_0120) recF 115856..116887 (-) 1032 WP_014509757.1 DNA replication/repair protein RecF Machinery gene
  THTHE16_RS00640 (Ththe16_0121) - 116889..118061 (-) 1173 WP_014509758.1 MFS transporter -
  THTHE16_RS00645 (Ththe16_0122) pstB 118071..118886 (-) 816 WP_008630440.1 phosphate ABC transporter ATP-binding protein PstB -
  THTHE16_RS00650 (Ththe16_0123) pstA 118880..120085 (-) 1206 WP_008630442.1 phosphate ABC transporter permease PstA -
  THTHE16_RS00655 (Ththe16_0124) pstC 120078..120980 (-) 903 WP_014509759.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37827.72 Da        Isoelectric Point: 8.4805

>NTDB_id=36276 THTHE16_RS00635 WP_014509757.1 115856..116887(-) (recF) [Thermus thermophilus SG0.5JP17-16]
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLLAEVETELGAYR
LEHRLGPGGREVFLNGKRVSLRALWELPGSVLVSPLDLEVVLGAKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFTPILREVHAALAPKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAEALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=36276 THTHE16_RS00635 WP_014509757.1 115856..116887(-) (recF) [Thermus thermophilus SG0.5JP17-16]
ATGCGGCTTCTCCTTTTCCGGCAACGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCTTGGCTTCTCGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCTTCCTCAACGGGAAGCGGGTGAGCCTTCGGGCCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGTGGTCCTCGGGGCCAAGGAGGAAAGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTCTCCCGCCGCTACGCCGCCCTCCTCTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCTGGAGGGGAGGGCCTTTCCGCCTGGGACCGGGAACTCGCCCGCTACGGGGACGAGATCGTGGCCCTGCGGCG
CCGCTTCCTCCGGCGCTTCACCCCCATCCTGCGGGAGGTCCATGCCGCCCTCGCCCCCAAGGAGGCGGGGCTTCGCCTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTTTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGAGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCGAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.246

98.251

0.405

Multiple sequence alignment